General information for g6920.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Decaprenyl-diphosphate synthase subunit 2.
Parent gene
- The parent gene g6920 is located on chr_2: 19938798..19940954 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6920 | g6920.t1 | isoform | g6920.t1 | 19938798 | 19940954 |
| chr_2 | g6920 | g6920.t1 | exon | g6920.t1.exon1 | 19938798 | 19939476 |
| chr_2 | g6920 | g6920.t1 | cds | g6920.t1.CDS1 | 19938798 | 19939476 |
| chr_2 | g6920 | g6920.t1 | exon | g6920.t1.exon2 | 19939543 | 19939597 |
| chr_2 | g6920 | g6920.t1 | cds | g6920.t1.CDS2 | 19939543 | 19939597 |
| chr_2 | g6920 | g6920.t1 | exon | g6920.t1.exon3 | 19939656 | 19939782 |
| chr_2 | g6920 | g6920.t1 | cds | g6920.t1.CDS3 | 19939656 | 19939782 |
| chr_2 | g6920 | g6920.t1 | exon | g6920.t1.exon4 | 19939854 | 19940001 |
| chr_2 | g6920 | g6920.t1 | cds | g6920.t1.CDS4 | 19939854 | 19940001 |
| chr_2 | g6920 | g6920.t1 | exon | g6920.t1.exon5 | 19940677 | 19940954 |
| chr_2 | g6920 | g6920.t1 | cds | g6920.t1.CDS5 | 19940677 | 19940954 |
| chr_2 | g6920 | g6920.t1 | TSS | g6920.t1 | 19941074 | 19941074 |
| chr_2 | g6920 | g6920.t1 | TTS | g6920.t1 | NA | NA |
Sequences
>g6920.t1 Gene=g6920 Length=1287
ATGTTGAATAGAATTCAAGCAGGAAAAAAGTTGATTGCGAATTTGCAGCAATTAAGTAGC
CGCAATGTCTCGGCCACGATGCAAATTAACGAAAAAATTATGGTCAAAGCTGAGACAAAA
AATGAATGGAATCGTGCATTGAGCGAGGCTGAAAAGATTGTTGGATATCAAACATCATTT
TTAAGCTTACGATATTTATTAAGTGATGAAGTTACAAATTTAGCATTACATATGAGAAAA
CTTGTTGGCAGCACACATCCTCTAGTTTCAACTGGAAAATCGCTAATTTATGGACAAAAT
AATATGCAGACATGGGGTCTAATTGTCCTTCTAGTTTCAAAAATGGCTGGTCATGCTGAT
GGAATACTTGAATCAGAGCAAGACAAGAGTGCTGGTGTGTTAATGTCACAAAGAACACTT
GCAGAAGTAGTTGAGATGGTTCGAACAGCCAACATGATTCACTCTTCGGGTGTTCTAAAT
TTACAACACCTTCAAAAATCAGGCAATGACTTGTCATTTGACTCGGACTTGATTTTCGGA
AATAAAATTGCATTGCTTGGTGGTGACATTTTGCTTGGAAATGCATCAACACAAATGGCG
CAATTGAAAAATCAAGAAGTTGTCGAGTTAATGTGTACAGCTGCCAGAGATATTAGCGAT
TCACATTTTATTGGTGATCGTGATGTTCAAAATAATCCACTGCCATGGGATCCAGTTAAA
AGAGCAGAAGAAATCAGAAATACTACAGACATTGAAAGTGAAGTTCAAGTTGATGAAATT
GACAACAAACAGCCGTTTAATTTACGACTAATGCTTGGAGGTCCAGAAAGTGAATGGACA
GTGAGACATACATTGGCTAATGGTACTTTGCTTGGTAAAAGTTGTCAAAGTGCATTAATG
TTAGCAAAACAACCAGTTGAGTTGCAAAGACAAGCTTACTTCTTTGGAAAACATCTCGCA
CTTGCATGGCAGGCCAGCATGGACCTTGAACCATACAAAACAGAACTGCCATTAGGTCAC
AAATTGAGTCTTATTTCAGCACCAATTCTTTATCATCTACAATATGATGCTTCAATTTAT
GATGAAATCAAAAAAGGCATGGAATCAGTTGATGATGTAAATTATTATAAAATACATAAG
GAAGTCTCAAGAGGACCAGGCATTGAACGCACAAAAGAGTTACAAAGTAAACACACACTT
GCTGCAATGACAGAATTATACAAATTTCCTAAATCTGACGCACGTGAAGCACTTGAAAAA
ATTATTCTTGCCATGCAAGAAGACTAA
>g6920.t1 Gene=g6920 Length=428
MLNRIQAGKKLIANLQQLSSRNVSATMQINEKIMVKAETKNEWNRALSEAEKIVGYQTSF
LSLRYLLSDEVTNLALHMRKLVGSTHPLVSTGKSLIYGQNNMQTWGLIVLLVSKMAGHAD
GILESEQDKSAGVLMSQRTLAEVVEMVRTANMIHSSGVLNLQHLQKSGNDLSFDSDLIFG
NKIALLGGDILLGNASTQMAQLKNQEVVELMCTAARDISDSHFIGDRDVQNNPLPWDPVK
RAEEIRNTTDIESEVQVDEIDNKQPFNLRLMLGGPESEWTVRHTLANGTLLGKSCQSALM
LAKQPVELQRQAYFFGKHLALAWQASMDLEPYKTELPLGHKLSLISAPILYHLQYDASIY
DEIKKGMESVDDVNYYKIHKEVSRGPGIERTKELQSKHTLAAMTELYKFPKSDAREALEK
IILAMQED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g6920.t1 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 59 | 426 | 0 |
| 1 | g6920.t1 | PANTHER | PTHR12001:SF55 | DECAPRENYL-DIPHOSPHATE SYNTHASE SUBUNIT 2 | 18 | 427 | 0 |
| 2 | g6920.t1 | PANTHER | PTHR12001 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | 18 | 427 | 0 |
| 3 | g6920.t1 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 103 | 411 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed