Gene loci information

Transcript annotation

  • This transcript has been annotated as Molybdenum cofactor biosynthesis protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6934 g6934.t1 isoform g6934.t1 20040689 20042605
chr_2 g6934 g6934.t1 exon g6934.t1.exon1 20040689 20040850
chr_2 g6934 g6934.t1 cds g6934.t1.CDS1 20040689 20040850
chr_2 g6934 g6934.t1 exon g6934.t1.exon2 20040908 20041844
chr_2 g6934 g6934.t1 cds g6934.t1.CDS2 20040908 20041844
chr_2 g6934 g6934.t1 exon g6934.t1.exon3 20042067 20042605
chr_2 g6934 g6934.t1 cds g6934.t1.CDS3 20042067 20042605
chr_2 g6934 g6934.t1 TSS g6934.t1 NA NA
chr_2 g6934 g6934.t1 TTS g6934.t1 NA NA

Sequences

>g6934.t1 Gene=g6934 Length=1638
ATGTATCTAAGAAAGATTTATTCAAAGAATGTCATTGAATGCTTAAATTCATCTTCATAT
ATCAATCATCTGCGAAATTTGTCATCAAAATCATTAAAACCAAATGTTGAATTTATCACT
GATAATGAAAAAATTACAACGCAAATCGAACAACGTAGAAATAAGCAACAAGTTTCACCA
TTAATCGATTCTTTTGGAAGATTTCATTCATATTTGAGAATATCATTAACTGAAAAGTGC
AATCTGAGATGTCAATATTGCATGCCTGAAGAAGGTGTGCCATTGTCTCCCAAATCACAT
CTTTTGACAACTGATGAAATTATTTACATATCAAAACTATTTATTGATCAAGGTGTAAGA
AAAATTCGTTTAACAGGAGGTGAGCCCACCATAAGAAAGGACTTGGTTGAAATCATAGCA
AGACTTAAAGAAATTCCACTACTTGAGAATATTAGCATTACTACAAATGGACTAGTGTTA
ACAAGAAATCTTGTCAGTTATCAACGTGCTGGACTTGATTCACTTAATATTTCTCTTGAT
ACTCTTCAGCCTAAAAAATATGAAACAATAACAAGGAGAAAAGGTTTCGAGAGAGTTGTA
GCTGGAATAGATTTAGCAATTCAATTGGGTTACAAACCAAAAATAAATTGTGTAGCTATG
AAGAATTTCAACGAAGATGAAATTTGTGACTTTGTTGAATGGACTAAAGATCGAAATGTT
GATATTAGATTTATAGAGTACATGCCTTTTTCTGGAAATAGGTGGGAGACTGAAAAACTT
TTATCATTCCGTGACATGTTGAATTTAATTCAACAAAAATATCCAACATTTGAAGCCCTT
GAGAACAAACCAAATGATACTTCAAAAGCTTTTAGAGTTCCTGGCTATGAAGGTCAAGTT
GGTTTCATTACTTCAATGACAGAACATTTCTGTGGTTCATGTAACCGCTTGAGAATTACT
GCAGATGGAAATTTAAAAGTTTGTTTATTCGGAAACAAAGAGGTATCATTAAGAGATGCA
ATTCGTAATGGATGCTCTGAAGATGATTTGATTGCATTGATTGGTGCATCAGTTCTAAGA
AAAAAGAAACAACATGCAGAAAATATTTTATTATTTAATCAACAAAACTATCCATTTCGA
TTTCAAGCGAGAAATTATTCCTCAAAAACTGACCTTACACATGTCGATGAACAAGGAAAG
GCAAAAATGGTAAATGTCATTGATAAACCACATACAAAGAGAAAAGCAATTGCTAGAGGA
TTCGTTAATGTTGGTGCAGAAATTACAAAACTGATTTCTAATAATCTTATGAAGAAAGGA
GATGTTTTGACAATCGCACAACTAGCCGGCATAATGGGTGCTAAACAAACTTCAAATTTA
ATACCTCTTACTCATCCAATTCCAATTTCATCAATAAAAATTGAAGTTAAATTGAATGAA
GAGAAACAGAGAGTTGAAATAACATCAGCAATTGAATGTTGTTGGAATACAGGTATAGAA
ATTGAAGCATTAACTGCCGTTGCGATTGCTTCTCTTACCATATATGACATGTGCAAGGCT
GTTTCGCACGATATCACAATTACTGACATTAAATTATTGGAAAAATCCGGTGGTAAAAAT
TATTTTAAGAGAACATAA

>g6934.t1 Gene=g6934 Length=545
MYLRKIYSKNVIECLNSSSYINHLRNLSSKSLKPNVEFITDNEKITTQIEQRRNKQQVSP
LIDSFGRFHSYLRISLTEKCNLRCQYCMPEEGVPLSPKSHLLTTDEIIYISKLFIDQGVR
KIRLTGGEPTIRKDLVEIIARLKEIPLLENISITTNGLVLTRNLVSYQRAGLDSLNISLD
TLQPKKYETITRRKGFERVVAGIDLAIQLGYKPKINCVAMKNFNEDEICDFVEWTKDRNV
DIRFIEYMPFSGNRWETEKLLSFRDMLNLIQQKYPTFEALENKPNDTSKAFRVPGYEGQV
GFITSMTEHFCGSCNRLRITADGNLKVCLFGNKEVSLRDAIRNGCSEDDLIALIGASVLR
KKKQHAENILLFNQQNYPFRFQARNYSSKTDLTHVDEQGKAKMVNVIDKPHTKRKAIARG
FVNVGAEITKLISNNLMKKGDVLTIAQLAGIMGAKQTSNLIPLTHPIPISSIKIEVKLNE
EKQRVEITSAIECCWNTGIEIEALTAVAIASLTIYDMCKAVSHDITITDIKLLEKSGGKN
YFKRT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g6934.t1 CDD cd01335 Radical_SAM 74 271 3.41778E-21
12 g6934.t1 CDD cd01420 MoaC_PE 403 540 1.0918E-70
11 g6934.t1 Gene3D G3DSA:3.20.20.70 Aldolase class I 58 380 8.1E-108
10 g6934.t1 Gene3D G3DSA:3.30.70.640 - 389 545 1.8E-60
7 g6934.t1 Hamap MF_01225_B GTP 3’,8-cyclase [moaA]. 61 426 36.537369
6 g6934.t1 PANTHER PTHR22960 MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A 47 368 3.9E-159
5 g6934.t1 PANTHER PTHR22960 MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A 393 541 3.9E-159
1 g6934.t1 Pfam PF04055 Radical SAM superfamily 74 234 1.1E-27
3 g6934.t1 Pfam PF13353 4Fe-4S single cluster domain 76 181 2.7E-7
4 g6934.t1 Pfam PF06463 Molybdenum Cofactor Synthesis C 240 366 1.0E-38
2 g6934.t1 Pfam PF01967 MoaC family 403 538 3.6E-51
14 g6934.t1 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 76 87 -
18 g6934.t1 SFLD SFLDG01067 SPASM/twitch domain containing 59 367 0.0
19 g6934.t1 SFLD SFLDG01383 cyclic pyranopterin phosphate synthase (MoaA-like) 59 367 0.0
15 g6934.t1 SMART SM00729 MiaB 70 272 2.1E-11
8 g6934.t1 SUPERFAMILY SSF102114 Radical SAM enzymes 60 335 3.79E-76
9 g6934.t1 SUPERFAMILY SSF55040 Molybdenum cofactor biosynthesis protein C, MoaC 399 540 9.55E-50
16 g6934.t1 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 61 368 8.4E-109
17 g6934.t1 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 392 540 3.4E-54

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006777 Mo-molybdopterin cofactor biosynthetic process BP
GO:0046872 metal ion binding MF
GO:0051539 4 iron, 4 sulfur cluster binding MF
GO:0003824 catalytic activity MF
GO:0051536 iron-sulfur cluster binding MF
GO:0019008 molybdopterin synthase complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values