General information for g6947.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Modifier of mdg4.
Parent gene
- The parent gene g6947 is located on chr_2: 20102053..20122817 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6947 | g6947.t1 | TSS | g6947.t1 | 20101322 | 20101322 |
| chr_2 | g6947 | g6947.t1 | isoform | g6947.t1 | 20102053 | 20122817 |
| chr_2 | g6947 | g6947.t1 | exon | g6947.t1.exon1 | 20102053 | 20102086 |
| chr_2 | g6947 | g6947.t1 | cds | g6947.t1.CDS1 | 20102053 | 20102086 |
| chr_2 | g6947 | g6947.t1 | exon | g6947.t1.exon2 | 20108102 | 20108195 |
| chr_2 | g6947 | g6947.t1 | cds | g6947.t1.CDS2 | 20108102 | 20108195 |
| chr_2 | g6947 | g6947.t1 | exon | g6947.t1.exon3 | 20109064 | 20109145 |
| chr_2 | g6947 | g6947.t1 | cds | g6947.t1.CDS3 | 20109064 | 20109145 |
| chr_2 | g6947 | g6947.t1 | exon | g6947.t1.exon4 | 20120181 | 20121059 |
| chr_2 | g6947 | g6947.t1 | cds | g6947.t1.CDS4 | 20120181 | 20121059 |
| chr_2 | g6947 | g6947.t1 | exon | g6947.t1.exon5 | 20121413 | 20121544 |
| chr_2 | g6947 | g6947.t1 | cds | g6947.t1.CDS5 | 20121413 | 20121544 |
| chr_2 | g6947 | g6947.t1 | exon | g6947.t1.exon6 | 20121806 | 20121883 |
| chr_2 | g6947 | g6947.t1 | cds | g6947.t1.CDS6 | 20121806 | 20121883 |
| chr_2 | g6947 | g6947.t1 | exon | g6947.t1.exon7 | 20121948 | 20122817 |
| chr_2 | g6947 | g6947.t1 | cds | g6947.t1.CDS7 | 20121948 | 20122817 |
| chr_2 | g6947 | g6947.t1 | TTS | g6947.t1 | 20122897 | 20122897 |
Sequences
>g6947.t1 Gene=g6947 Length=2169
ATGGCTCAGCCGAATCAGTCGATTCGATATTGCTGGGAAGCGGACAAAGTCAAAACGCTC
ATCAGACTGCGTGCAGAGTTGTCACCGTTGTTTACAGGCAAAAGAAATGCATCAAAATAT
GCATGGGCCGTCGTGGAGCGAGAACTCAATGTCCCACTTCCAATTTCAAAGATCATCAAA
AAATGGAATAACTTATTGCAAGAGTACAAGGCTATAAAATTGTCAGAAGAACCAAAGCGA
CGTGAATGGCCATTCTTCACACTAATGGACGTTTATTTTAGCGACCAAGTTAACGATCCA
TCTTTGCGCCTCTTTTCGTCCACAAAACGTTTTGATACTGACACATTCGATGACAAAAAC
TTTGATGAAGAACTACAAGCAGTTCTCGCAGCTGCCAATTTAAATGCATCCATGTCATCT
GTATTATCAAATTTAGGCCTCGGTCTTGGCATGAATAGACAAAACTATCTCAAACGTGAC
ACAAACTTGACGTCAAATAATAGTAATAGAAATACTCCAATGGATATTGATGTGGTGGAT
GAGAAGCATGATGATGAAGATGATGATACAAAATCAGAAGTATCTATTAACTTGAGCACA
AAACTTCTAAATAACAGTCTCATGAATACACCGAATTCTACAAATGATAAAAATAACAAT
AAAAGTCATCTCACAAGCTTAAATACCAGCAAACTCAGCGATAGCCTGTCAAAAGAAAAA
GATAGTCTAATTGAGCCGAACAACAACACATTAAATGCAAACCGAAATCTAATGGCAAAC
AGTGCCGGCTATAATACCGCAAGCGAAGGTAGCATTAATAGCAGTCGAAATAGTGCGAGT
AGTCACGCGAACAATAATGATGATGACTATGAGGACAATATGGTGCGTACTTATGAGCGC
AATTTGAAAAACTTAAATCAAAAGTTCTTGCATGAGATGAATGAGCATCATAATATTGAT
CAATATCTACTATCATGGCGTGGTTTTCATGGAAATATGTGCAAAGGTTTTCATAATTTA
CAACGCGATGGACAAATGGTTGACGTTACAATCGCTGCAGGTGGAAAAATTTTCAAAGCA
CATAAATTGGTTCTGTCTGTTTGCAGTCCATACTTTCAAAAGATTTTTATCGAGCATCCG
TCATCACATCCGATCCTGTTTATGACTGATGTCAATAGTAATCACATGGCTGGATTGTTG
GATTTCATGTATAGTGGACAGGTCAACGTAAAATATGAAGATCTACCGAATTTTTTGAAA
GTCGCTGAAGCGCTTCAAGTCAAGGGGCTCCATGGCGAGAGCACGGGCGACAATAACGAA
GAACGAGAGCGTGAAAGAGAACGCGAAGAAAACAACTATGCAATGCAATATCGTCAACAA
CAGCAGCAACAAGCTTTGCATCTGCAACAACAACAGCAACAGTTCAATTATAGTCAAATG
CGTCAACCCGCACCCGCTCATTTCCAACATCCCGATAATATCATCAATGAGAATCGACAA
AATATTCGACATCACATTAAGCCGAAAACATCACTCATCAATAGCAGCAACAATAATCCC
GATACAACGACGATGAATATGACGAATAATAACAACACTAGTACTACAAACAACAACTTA
AGCCTAGCAAACAATCACCTTCAGCAACAACAAAAATTTGGTGTGCAGCAAGTCAACTCG
AGTAGCAAAATGCTGGATAATCAAAAATACCAGAAATATTTTGCAAAACGGAAACTACTG
GCACAATATGAACAAGAAATGAGACAGGAAAAACGGAATCGATCAGGCGATAGTATAGAT
GACGAAAGTGATAATATTCGGCCACTAAACATGAGAAGATCTCAATCGGATGCAACAGAT
GATGACTCACGACTTGATAATGGAAAGGCTCACAATAACAATAACAATTGCGTTGGTCTC
AATCTGATACAGAATATAAAAACGGAAAAGGGCGATGATCATGAGCATCCGGATGTAAAT
GGCAATGACGAAGAGACAGCCACAGGATTTTATGGATCACAATTAAGTAAGATGAAACAT
TCCATTCTTGAACCGAACATAGTATTACAGCACAGCGATGAAGTCATCTCGCCATCATCG
AATGGCAACAGTAACTCCATCACAAGTACATTGCAGAATACAAATTTAAGTCAGAAAACG
GCAAGCTAA
>g6947.t1 Gene=g6947 Length=722
MAQPNQSIRYCWEADKVKTLIRLRAELSPLFTGKRNASKYAWAVVERELNVPLPISKIIK
KWNNLLQEYKAIKLSEEPKRREWPFFTLMDVYFSDQVNDPSLRLFSSTKRFDTDTFDDKN
FDEELQAVLAAANLNASMSSVLSNLGLGLGMNRQNYLKRDTNLTSNNSNRNTPMDIDVVD
EKHDDEDDDTKSEVSINLSTKLLNNSLMNTPNSTNDKNNNKSHLTSLNTSKLSDSLSKEK
DSLIEPNNNTLNANRNLMANSAGYNTASEGSINSSRNSASSHANNNDDDYEDNMVRTYER
NLKNLNQKFLHEMNEHHNIDQYLLSWRGFHGNMCKGFHNLQRDGQMVDVTIAAGGKIFKA
HKLVLSVCSPYFQKIFIEHPSSHPILFMTDVNSNHMAGLLDFMYSGQVNVKYEDLPNFLK
VAEALQVKGLHGESTGDNNEEREREREREENNYAMQYRQQQQQQALHLQQQQQQFNYSQM
RQPAPAHFQHPDNIINENRQNIRHHIKPKTSLINSSNNNPDTTTMNMTNNNNTSTTNNNL
SLANNHLQQQQKFGVQQVNSSSKMLDNQKYQKYFAKRKLLAQYEQEMRQEKRNRSGDSID
DESDNIRPLNMRRSQSDATDDDSRLDNGKAHNNNNNCVGLNLIQNIKTEKGDDHEHPDVN
GNDEETATGFYGSQLSKMKHSILEPNIVLQHSDEVISPSSNGNSNSITSTLQNTNLSQKT
AS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g6947.t1 | CDD | cd18315 | BTB_POZ_BAB-like | 347 | 429 | 1.26751E-34 |
| 7 | g6947.t1 | Coils | Coil | Coil | 295 | 315 | - |
| 9 | g6947.t1 | Coils | Coil | Coil | 439 | 459 | - |
| 8 | g6947.t1 | Coils | Coil | Coil | 573 | 593 | - |
| 6 | g6947.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 325 | 476 | 2.2E-29 |
| 15 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 233 | - |
| 18 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 252 | - |
| 17 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 291 | - |
| 20 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 284 | - |
| 13 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 449 | - |
| 19 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 434 | 449 | - |
| 12 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 628 | - |
| 14 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 633 | - |
| 16 | g6947.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 722 | - |
| 3 | g6947.t1 | PANTHER | PTHR23110 | BTB DOMAIN TRANSCRIPTION FACTOR | 318 | 440 | 9.2E-96 |
| 4 | g6947.t1 | PANTHER | PTHR23110:SF84 | AGAP003685-PA | 318 | 440 | 9.2E-96 |
| 1 | g6947.t1 | Pfam | PF13837 | Myb/SANT-like DNA-binding domain | 10 | 90 | 6.5E-8 |
| 2 | g6947.t1 | Pfam | PF00651 | BTB/POZ domain | 338 | 430 | 5.2E-21 |
| 21 | g6947.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 347 | 412 | 20.582 |
| 11 | g6947.t1 | SMART | SM00225 | BTB_4 | 347 | 442 | 8.8E-17 |
| 5 | g6947.t1 | SUPERFAMILY | SSF54695 | POZ domain | 323 | 430 | 3.24E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
