Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t12 isoform g6957.t12 20173705 20176045
chr_2 g6957 g6957.t12 exon g6957.t12.exon1 20173705 20174571
chr_2 g6957 g6957.t12 TTS g6957.t12 20173716 20173716
chr_2 g6957 g6957.t12 cds g6957.t12.CDS1 20174477 20174571
chr_2 g6957 g6957.t12 exon g6957.t12.exon2 20174692 20174887
chr_2 g6957 g6957.t12 cds g6957.t12.CDS2 20174692 20174830
chr_2 g6957 g6957.t12 exon g6957.t12.exon3 20175915 20176045
chr_2 g6957 g6957.t12 TSS g6957.t12 NA NA

Sequences

>g6957.t12 Gene=g6957 Length=1194
GTGGTTTCAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCT
ATGACACAGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTG
CTATTGCTCAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCA
GACGGCGTATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACAT
TGGACTGTTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCAT
TGTCAAACGTTTTCCGTGGTACTGGTGTAAATAACATCAAAATTTTTGCGCACTATTATT
TCCAACTTAAAGCTGCAAAAATAAAAATTTCCCCCATCGAAAGCATAGAGAAATTAATAT
GAAATCTTTCATATTTTTCTCACATAAGAACATTCAGTTAAAATAATTCAAAACGAGAAA
ACAATATAATTTATTTAAAATCGATACACACACTTTGTTTAGTCTATGTAGATCTTTTGA
TGGTTAAAACCTTTAAAGTAATATAAACTGATTTAATATTTAAGCTGGCAATAACAGATT
CAGGTACTCTCTCTCTCTATTTTCTTTAAAAAATATTCTGAGAATAGCTGTCCCTTTTAT
TTTATATTGATATTCATTTTTCGATAGCAAGCAGGTAGAAAAACGTAATAGACATTCCCA
TCAAGAAAGAAAATAACAATTCTAAAGAAATTTAAAATCCTGATAAATAGCTTGCAAATG
AAGGGATGAAAAATGCAATTTTAATGCATATTTTTAAAACTTTGAGTACCTGATGATAGC
AAAAAATTGTTCTTGTCAGCTGACGATATTTCAAAGAAAAGTGGAAATTAAGCAATTTTC
TTTTGGCTATTAATTAAATTTTGAGCGCTTATAGTTTCAATACGACAAAATAAAATAATG
ATGAGCGAGAAGAAGAATATCTATAATGCAATAGTATTTAAATGGATGCAACAACAACAA
CACACGATAAAGTGAAATTTTGTTTTAATTCTATTAATAGTGGACACACACAAGCGAATT
CATTTTTAAATAAATTATTTGTAAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAAC
CGATAAAATTTAAATAAAAGTTCACAAAAAAATTAGAAAAACTAAAATTAGAAA

>g6957.t12 Gene=g6957 Length=77
MMMQSGRAKEDVMYKNTLDCWVKISKQEGPKAFFKGALSNVFRGTGVNNIKIFAHYYFQL
KAAKIKISPIESIEKLI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g6957.t12 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 1 62 0.0000000
2 g6957.t12 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 1 48 0.0000000
3 g6957.t12 PANTHER PTHR45635:SF17 ADENINE NUCLEOTIDE TRANSLOCATOR 1 48 0.0000000
1 g6957.t12 Pfam PF00153 Mitochondrial carrier protein 3 55 0.0000001
6 g6957.t12 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 1 61 11.9370000
4 g6957.t12 SUPERFAMILY SSF103506 Mitochondrial carrier 1 47 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed