General information for g6957.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as ADP,ATP carrier protein 1.
Parent gene
- The parent gene g6957 is located on chr_2: 20176068..20177053 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6957 | g6957.t16 | isoform | g6957.t16 | 20173705 | 20176283 |
| chr_2 | g6957 | g6957.t16 | exon | g6957.t16.exon1 | 20173705 | 20174039 |
| chr_2 | g6957 | g6957.t16 | TTS | g6957.t16 | 20173716 | 20173716 |
| chr_2 | g6957 | g6957.t16 | exon | g6957.t16.exon2 | 20174205 | 20174887 |
| chr_2 | g6957 | g6957.t16 | cds | g6957.t16.CDS1 | 20174642 | 20174887 |
| chr_2 | g6957 | g6957.t16 | exon | g6957.t16.exon3 | 20175915 | 20176283 |
| chr_2 | g6957 | g6957.t16 | cds | g6957.t16.CDS2 | 20175915 | 20176076 |
| chr_2 | g6957 | g6957.t16 | TSS | g6957.t16 | 20177133 | 20177133 |
Sequences
>g6957.t16 Gene=g6957 Length=1387
AAACAAATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGT
AACTTGGGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGAT
TATGCTCGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACT
GGTCTTGTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGT
GGTTTCAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTAT
GACACAGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTGCT
ATTGCTCAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGA
CGGCGTATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTG
GACTGTTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTG
TCAAACGTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAG
AAGCTCATTGCCTAAATTGATTATTGTCGTTACAATAATATCTACAACAAATTATATAAA
CATTAACATCTTTAAATAACGCAAGTAAATAACATCAAAATTTTTGCGCACTATTATTTC
CAACTTAAAGCTGCAAAAATAAAAATTTCCCCCATCGAAAGCATAGAGAAATTAATATGA
AATCTTTCATATTTTTCTCACATAAGAACATTCAGTTAAAATAATTCAAAACGAGAAAAC
AATATAATTTATTTAAAATCGATACACACACTTTGTTTAGTCTATGTAGATCTTTTGATG
GTTAAAACCTTTAAAGTAATATAAACTGATTTAATATTTAAGCTGGCAATAACAGATTCA
GGTACTCTCTCTCTCTATTTTCTTTAAAAAATATTCTGAGAATAGCTGTCCCTTTTATTT
TATATTGATATTCATTTTTCGATAGCAAGCAGCTGACGATATTTCAAAGAAAAGTGGAAA
TTAAGCAATTTTCTTTTGGCTATTAATTAAATTTTGAGCGCTTATAGTTTCAATACGACA
AAATAAAATAATGATGAGCGAGAAGAAGAATATCTATAATGCAATAGTATTTAAATGGAT
GCAACAACAACAACACACGATAAAGTGAAATTTTGTTTTAATTCTATTAATAGTGGACAC
ACACAAGCGAATTCATTTTTAAATAAATTATTTGTAAGATTCTCAAAATTGGCATGTTTG
AGATCTTGGAAACCGATAAAATTTAAATAAAAGTTCACAAAAAAATTAGAAAAACTAAAA
TTAGAAA
>g6957.t16 Gene=g6957 Length=135
MKSDGVIGLYRGFNVSVQGIIIYRAAYFGCYDTARGSLPDPKNSPFIVNFAIAQVVTISS
GILSYPFDTVRRRMMMQSGRAKEDVMYKNTLDCWVKISKQEGPKAFFKGALSNVFRGTGG
ALVLVFYDELKKLIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6957.t16 | Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 1 | 134 | 3.6E-47 |
| 3 | g6957.t16 | PANTHER | PTHR45635 | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 2 | 134 | 9.5E-63 |
| 4 | g6957.t16 | PANTHER | PTHR45635:SF7 | ADP/ATP TRANSLOCASE 4 | 2 | 134 | 9.5E-63 |
| 6 | g6957.t16 | PRINTS | PR00926 | Mitochondrial carrier protein signature | 10 | 28 | 3.5E-21 |
| 5 | g6957.t16 | PRINTS | PR00926 | Mitochondrial carrier protein signature | 53 | 75 | 3.5E-21 |
| 2 | g6957.t16 | Pfam | PF00153 | Mitochondrial carrier protein | 1 | 36 | 1.4E-7 |
| 1 | g6957.t16 | Pfam | PF00153 | Mitochondrial carrier protein | 44 | 134 | 2.2E-17 |
| 10 | g6957.t16 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 45 | - |
| 11 | g6957.t16 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 46 | 67 | - |
| 9 | g6957.t16 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 68 | 135 | - |
| 14 | g6957.t16 | ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 1 | 37 | 12.065 |
| 15 | g6957.t16 | ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 44 | 133 | 23.972 |
| 7 | g6957.t16 | SUPERFAMILY | SSF103506 | Mitochondrial carrier | 2 | 130 | 4.58E-36 |
| 12 | g6957.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 13 | g6957.t16 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 44 | 66 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0140021 | mitochondrial ADP transmembrane transport | BP |
| GO:1990544 | mitochondrial ATP transmembrane transport | BP |
| GO:0055085 | transmembrane transport | BP |
| GO:0005471 | ATP:ADP antiporter activity | MF |
| GO:0005743 | mitochondrial inner membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
