Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t17 isoform g6957.t17 20173705 20177053
chr_2 g6957 g6957.t17 exon g6957.t17.exon1 20173705 20174887
chr_2 g6957 g6957.t17 TTS g6957.t17 20173716 20173716
chr_2 g6957 g6957.t17 cds g6957.t17.CDS1 20174805 20174887
chr_2 g6957 g6957.t17 exon g6957.t17.exon2 20176007 20176411
chr_2 g6957 g6957.t17 cds g6957.t17.CDS2 20176007 20176411
chr_2 g6957 g6957.t17 exon g6957.t17.exon3 20176888 20177053
chr_2 g6957 g6957.t17 cds g6957.t17.CDS3 20176888 20177053
chr_2 g6957 g6957.t17 TSS g6957.t17 20177133 20177133

Sequences

>g6957.t17 Gene=g6957 Length=1754
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCT
CGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTT
GTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTC
AACGTTTCAGTACAAGGTATTATCATTTACCGTTGTCACAATTTCGTCTGGTATCTTGTC
ATATCCATTCGACACTGTCAGACGGCGTATGATGATGCAGTCAGGTCGTGCTAAGGAAGA
TGTTATGTACAAGAACACATTGGACTGTTGGGTTAAAATCTCCAAACAAGAAGGACCAAA
AGCCTTCTTCAAGGGTGCATTGTCAAACGTTTTCCGTGGTACTGGTGGTGCACTTGTATT
GGTCTTCTACGACGAACTTAAGAAGCTCATTGCCTAAATTGATTATTGTCGTTACAATAA
TATCTACAACAAATTATATAAACATTAACATCTTTAAATAACGCAAGTAAATAACATCAA
AATTTTTGCGCACTATTATTTCCAACTTAAAGCTGCAAAAATAAAAATTTCCCCCATCGA
AAGCATAGAGAAATTAATATGAAATCTTTCATATTTTTCTCACATAAGAACATTCAGTTA
AAATAATTCAAAACGAGAAAACAATATAATTTATTTAAAATCGATACACACACTTTGTTT
AGTCTATGTAGATCTTTTGATGGTTAAAACCTTTAAAGTAATATAAACTGATTTAATATT
TAAGCTGGCAATAACAGATTCAGGTACTCTCTCTCTCTATTTTCTTTAAAAAATATTCTG
AGAATAGCTGTCCCTTTTATTTTATATTGATATTCATTTTTCGATAGCAAGCAGGTAGAA
AAACGTAATAGACATTCCCATCAAGAAAGAAAATAACAATTCTAAAGAAATTTAAAATCC
TGATAAATAGCTTGCAAATGAAGGGATGAAAAATGCAATTTTAATGCATATTTTTAAAAC
TTTGAGTACCTGATGATAGCAAAAAATTGTTCTTGTCAGCTGACGATATTTCAAAGAAAA
GTGGAAATTAAGCAATTTTCTTTTGGCTATTAATTAAATTTTGAGCGCTTATAGTTTCAA
TACGACAAAATAAAATAATGATGAGCGAGAAGAAGAATATCTATAATGCAATAGTATTTA
AATGGATGCAACAACAACAACACACGATAAAGTGAAATTTTGTTTTAATTCTATTAATAG
TGGACACACACAAGCGAATTCATTTTTAAATAAATTATTTGTAAGATTCTCAAAATTGGC
ATGTTTGAGATCTTGGAAACCGATAAAATTTAAATAAAAGTTCACAAAAAAATTAGAAAA
ACTAAAATTAGAAA

>g6957.t17 Gene=g6957 Length=217
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGGAAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGF
NVSVQGIIIYRCHNFVWYLVISIRHCQTAYDDAVRSC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6957.t17 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 212 0.000
3 g6957.t17 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 198 0.000
4 g6957.t17 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 198 0.000
6 g6957.t17 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 0.000
12 g6957.t17 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 0.000
13 g6957.t17 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 0.000
8 g6957.t17 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 0.000
10 g6957.t17 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 0.000
5 g6957.t17 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 0.000
7 g6957.t17 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 0.000
9 g6957.t17 PRINTS PR00926 Mitochondrial carrier protein signature 129 147 0.000
11 g6957.t17 PRINTS PR00926 Mitochondrial carrier protein signature 177 195 0.000
1 g6957.t17 Pfam PF00153 Mitochondrial carrier protein 9 103 0.000
2 g6957.t17 Pfam PF00153 Mitochondrial carrier protein 114 199 0.000
16 g6957.t17 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
17 g6957.t17 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 114 204 23.907
14 g6957.t17 SUPERFAMILY SSF103506 Mitochondrial carrier 7 199 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values