Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t18 isoform g6957.t18 20173705 20177053
chr_2 g6957 g6957.t18 exon g6957.t18.exon1 20173705 20174887
chr_2 g6957 g6957.t18 TTS g6957.t18 20173716 20173716
chr_2 g6957 g6957.t18 exon g6957.t18.exon2 20175915 20176151
chr_2 g6957 g6957.t18 cds g6957.t18.CDS1 20176138 20176151
chr_2 g6957 g6957.t18 exon g6957.t18.exon3 20176208 20176411
chr_2 g6957 g6957.t18 cds g6957.t18.CDS2 20176208 20176411
chr_2 g6957 g6957.t18 exon g6957.t18.exon4 20176888 20177053
chr_2 g6957 g6957.t18 cds g6957.t18.CDS3 20176888 20177053
chr_2 g6957 g6957.t18 TSS g6957.t18 20177133 20177133

Sequences

>g6957.t18 Gene=g6957 Length=1790
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGCGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGG
TCTTGTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGG
TTTCAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGA
CACAGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTGCTAT
TGCTCAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACG
GCGTATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGA
CTGTTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTC
AAACGTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAA
GCTCATTGCCTAAATTGATTATTGTCGTTACAATAATATCTACAACAAATTATATAAACA
TTAACATCTTTAAATAACGCAAGTAAATAACATCAAAATTTTTGCGCACTATTATTTCCA
ACTTAAAGCTGCAAAAATAAAAATTTCCCCCATCGAAAGCATAGAGAAATTAATATGAAA
TCTTTCATATTTTTCTCACATAAGAACATTCAGTTAAAATAATTCAAAACGAGAAAACAA
TATAATTTATTTAAAATCGATACACACACTTTGTTTAGTCTATGTAGATCTTTTGATGGT
TAAAACCTTTAAAGTAATATAAACTGATTTAATATTTAAGCTGGCAATAACAGATTCAGG
TACTCTCTCTCTCTATTTTCTTTAAAAAATATTCTGAGAATAGCTGTCCCTTTTATTTTA
TATTGATATTCATTTTTCGATAGCAAGCAGGTAGAAAAACGTAATAGACATTCCCATCAA
GAAAGAAAATAACAATTCTAAAGAAATTTAAAATCCTGATAAATAGCTTGCAAATGAAGG
GATGAAAAATGCAATTTTAATGCATATTTTTAAAACTTTGAGTACCTGATGATAGCAAAA
AATTGTTCTTGTCAGCTGACGATATTTCAAAGAAAAGTGGAAATTAAGCAATTTTCTTTT
GGCTATTAATTAAATTTTGAGCGCTTATAGTTTCAATACGACAAAATAAAATAATGATGA
GCGAGAAGAAGAATATCTATAATGCAATAGTATTTAAATGGATGCAACAACAACAACACA
CGATAAAGTGAAATTTTGTTTTAATTCTATTAATAGTGGACACACACAAGCGAATTCATT
TTTAAATAAATTATTTGTAAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAACCGAT
AAAATTTAAATAAAAGTTCACAAAAAAATTAGAAAAACTAAAATTAGAAA

>g6957.t18 Gene=g6957 Length=127
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGAFGR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g6957.t18 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 127 0.000
2 g6957.t18 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 9 124 0.000
3 g6957.t18 PANTHER PTHR45635:SF3 ADP/ATP TRANSLOCASE 2 9 124 0.000
5 g6957.t18 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 0.000
9 g6957.t18 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 0.000
10 g6957.t18 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 0.000
7 g6957.t18 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 0.000
8 g6957.t18 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 0.000
4 g6957.t18 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 0.000
6 g6957.t18 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 0.000
1 g6957.t18 Pfam PF00153 Mitochondrial carrier protein 9 103 0.000
13 g6957.t18 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
11 g6957.t18 SUPERFAMILY SSF103506 Mitochondrial carrier 7 126 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values