Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t20 isoform g6957.t20 20173705 20177053
chr_2 g6957 g6957.t20 exon g6957.t20.exon1 20173705 20174887
chr_2 g6957 g6957.t20 TTS g6957.t20 20173716 20173716
chr_2 g6957 g6957.t20 cds g6957.t20.CDS1 20174805 20174887
chr_2 g6957 g6957.t20 exon g6957.t20.exon2 20175929 20176411
chr_2 g6957 g6957.t20 cds g6957.t20.CDS2 20175929 20176411
chr_2 g6957 g6957.t20 exon g6957.t20.exon3 20176888 20177053
chr_2 g6957 g6957.t20 cds g6957.t20.CDS3 20176888 20177053
chr_2 g6957 g6957.t20 TSS g6957.t20 20177133 20177133

Sequences

>g6957.t20 Gene=g6957 Length=1832
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCT
CGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTT
GTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTC
AACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGACACA
GCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTGTTGTCACAAT
TTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACGGCGTATGATGATGCAGTC
AGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGACTGTTGGGTTAAAATCTC
CAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAACGTTTTCCGTGGTAC
TGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGCTCATTGCCTAAATTGA
TTATTGTCGTTACAATAATATCTACAACAAATTATATAAACATTAACATCTTTAAATAAC
GCAAGTAAATAACATCAAAATTTTTGCGCACTATTATTTCCAACTTAAAGCTGCAAAAAT
AAAAATTTCCCCCATCGAAAGCATAGAGAAATTAATATGAAATCTTTCATATTTTTCTCA
CATAAGAACATTCAGTTAAAATAATTCAAAACGAGAAAACAATATAATTTATTTAAAATC
GATACACACACTTTGTTTAGTCTATGTAGATCTTTTGATGGTTAAAACCTTTAAAGTAAT
ATAAACTGATTTAATATTTAAGCTGGCAATAACAGATTCAGGTACTCTCTCTCTCTATTT
TCTTTAAAAAATATTCTGAGAATAGCTGTCCCTTTTATTTTATATTGATATTCATTTTTC
GATAGCAAGCAGGTAGAAAAACGTAATAGACATTCCCATCAAGAAAGAAAATAACAATTC
TAAAGAAATTTAAAATCCTGATAAATAGCTTGCAAATGAAGGGATGAAAAATGCAATTTT
AATGCATATTTTTAAAACTTTGAGTACCTGATGATAGCAAAAAATTGTTCTTGTCAGCTG
ACGATATTTCAAAGAAAAGTGGAAATTAAGCAATTTTCTTTTGGCTATTAATTAAATTTT
GAGCGCTTATAGTTTCAATACGACAAAATAAAATAATGATGAGCGAGAAGAAGAATATCT
ATAATGCAATAGTATTTAAATGGATGCAACAACAACAACACACGATAAAGTGAAATTTTG
TTTTAATTCTATTAATAGTGGACACACACAAGCGAATTCATTTTTAAATAAATTATTTGT
AAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAACCGATAAAATTTAAATAAAAGTT
CACAAAAAAATTAGAAAAACTAAAATTAGAAA

>g6957.t20 Gene=g6957 Length=243
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGGAAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGF
NVSVQGIIIYRAAYFGCYDTARGSLPDPKNSPFIVNCCHNFVWYLVISIRHCQTAYDDAV
RSC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6957.t20 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 232 0.000
3 g6957.t20 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 216 0.000
4 g6957.t20 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 216 0.000
6 g6957.t20 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 0.000
12 g6957.t20 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 0.000
13 g6957.t20 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 0.000
8 g6957.t20 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 0.000
10 g6957.t20 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 0.000
5 g6957.t20 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 0.000
7 g6957.t20 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 0.000
9 g6957.t20 PRINTS PR00926 Mitochondrial carrier protein signature 129 147 0.000
11 g6957.t20 PRINTS PR00926 Mitochondrial carrier protein signature 177 195 0.000
2 g6957.t20 Pfam PF00153 Mitochondrial carrier protein 9 103 0.000
1 g6957.t20 Pfam PF00153 Mitochondrial carrier protein 114 203 0.000
16 g6957.t20 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
17 g6957.t20 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 114 204 27.705
14 g6957.t20 SUPERFAMILY SSF103506 Mitochondrial carrier 7 222 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed