Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t21 isoform g6957.t21 20173705 20177053
chr_2 g6957 g6957.t21 exon g6957.t21.exon1 20173705 20174887
chr_2 g6957 g6957.t21 TTS g6957.t21 20173716 20173716
chr_2 g6957 g6957.t21 cds g6957.t21.CDS1 20174642 20174887
chr_2 g6957 g6957.t21 exon g6957.t21.exon2 20175915 20176411
chr_2 g6957 g6957.t21 cds g6957.t21.CDS2 20175915 20176411
chr_2 g6957 g6957.t21 exon g6957.t21.exon3 20176900 20177053
chr_2 g6957 g6957.t21 cds g6957.t21.CDS3 20176900 20177053
chr_2 g6957 g6957.t21 TSS g6957.t21 20177133 20177133

Sequences

>g6957.t21 Gene=g6957 Length=1834
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAGTATCATCGATTGCTTCGTCCGTATT
CCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAATGTCATCAGATAT
TTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAAATTTTCTTGGGT
GGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTGGGTTCAGGTGGT
GCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCTCGTACACGTTTG
GGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTTGTTGATTGCATC
AAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTCAACGTTTCAGTA
CAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGACACAGCTCGTGGATCA
TTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTGCTATTGCTCAGGTTGTCACA
ATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACGGCGTATGATGATGCAG
TCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGACTGTTGGGTTAAAATC
TCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAACGTTTTCCGTGGT
ACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGCTCATTGCCTAAATT
GATTATTGTCGTTACAATAATATCTACAACAAATTATATAAACATTAACATCTTTAAATA
ACGCAAGTAAATAACATCAAAATTTTTGCGCACTATTATTTCCAACTTAAAGCTGCAAAA
ATAAAAATTTCCCCCATCGAAAGCATAGAGAAATTAATATGAAATCTTTCATATTTTTCT
CACATAAGAACATTCAGTTAAAATAATTCAAAACGAGAAAACAATATAATTTATTTAAAA
TCGATACACACACTTTGTTTAGTCTATGTAGATCTTTTGATGGTTAAAACCTTTAAAGTA
ATATAAACTGATTTAATATTTAAGCTGGCAATAACAGATTCAGGTACTCTCTCTCTCTAT
TTTCTTTAAAAAATATTCTGAGAATAGCTGTCCCTTTTATTTTATATTGATATTCATTTT
TCGATAGCAAGCAGGTAGAAAAACGTAATAGACATTCCCATCAAGAAAGAAAATAACAAT
TCTAAAGAAATTTAAAATCCTGATAAATAGCTTGCAAATGAAGGGATGAAAAATGCAATT
TTAATGCATATTTTTAAAACTTTGAGTACCTGATGATAGCAAAAAATTGTTCTTGTCAGC
TGACGATATTTCAAAGAAAAGTGGAAATTAAGCAATTTTCTTTTGGCTATTAATTAAATT
TTGAGCGCTTATAGTTTCAATACGACAAAATAAAATAATGATGAGCGAGAAGAAGAATAT
CTATAATGCAATAGTATTTAAATGGATGCAACAACAACAACACACGATAAAGTGAAATTT
TGTTTTAATTCTATTAATAGTGGACACACACAAGCGAATTCATTTTTAAATAAATTATTT
GTAAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAACCGATAAAATTTAAATAAAAG
TTCACAAAAAAATTAGAAAAACTAAAATTAGAAA

>g6957.t21 Gene=g6957 Length=298
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGSIIDCFVRI
PKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNLGSGG
AAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGFNVSV
QGIIIYRAAYFGCYDTARGSLPDPKNSPFIVNFAIAQVVTISSGILSYPFDTVRRRMMMQ
SGRAKEDVMYKNTLDCWVKISKQEGPKAFFKGALSNVFRGTGGALVLVFYDELKKLIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g6957.t21 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 297 2.5E-111
4 g6957.t21 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 297 3.8E-152
5 g6957.t21 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 297 3.8E-152
6 g6957.t21 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 6.0E-26
12 g6957.t21 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 3.2E-68
14 g6957.t21 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 3.2E-68
13 g6957.t21 PRINTS PR00926 Mitochondrial carrier protein signature 72 92 3.2E-68
9 g6957.t21 PRINTS PR00927 Adenine nucleotide translocator signature 83 95 6.0E-26
8 g6957.t21 PRINTS PR00927 Adenine nucleotide translocator signature 110 123 6.0E-26
11 g6957.t21 PRINTS PR00926 Mitochondrial carrier protein signature 125 143 3.2E-68
10 g6957.t21 PRINTS PR00926 Mitochondrial carrier protein signature 173 191 3.2E-68
7 g6957.t21 PRINTS PR00927 Adenine nucleotide translocator signature 212 228 6.0E-26
15 g6957.t21 PRINTS PR00926 Mitochondrial carrier protein signature 216 238 3.2E-68
2 g6957.t21 Pfam PF00153 Mitochondrial carrier protein 9 99 2.2E-24
3 g6957.t21 Pfam PF00153 Mitochondrial carrier protein 110 199 2.8E-23
1 g6957.t21 Pfam PF00153 Mitochondrial carrier protein 207 297 1.6E-16
18 g6957.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 170 -
22 g6957.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 171 189 -
20 g6957.t21 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 190 208 -
21 g6957.t21 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 209 230 -
19 g6957.t21 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 231 298 -
26 g6957.t21 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 97 22.663
27 g6957.t21 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 110 200 27.705
25 g6957.t21 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 207 296 23.972
16 g6957.t21 SUPERFAMILY SSF103506 Mitochondrial carrier 7 292 6.8E-82
24 g6957.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 111 133 -
23 g6957.t21 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 208 230 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed