Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t24 isoform g6957.t24 20173705 20177053
chr_2 g6957 g6957.t24 exon g6957.t24.exon1 20173705 20174887
chr_2 g6957 g6957.t24 TTS g6957.t24 20173716 20173716
chr_2 g6957 g6957.t24 cds g6957.t24.CDS1 20174642 20174887
chr_2 g6957 g6957.t24 exon g6957.t24.exon2 20175915 20176171
chr_2 g6957 g6957.t24 cds g6957.t24.CDS2 20175915 20176076
chr_2 g6957 g6957.t24 exon g6957.t24.exon3 20176290 20176411
chr_2 g6957 g6957.t24 exon g6957.t24.exon4 20176888 20177053
chr_2 g6957 g6957.t24 TSS g6957.t24 20177133 20177133

Sequences

>g6957.t24 Gene=g6957 Length=1728
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATCATTGGATTATG
CTCGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTC
TTGTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTT
TCAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGACA
CAGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTGCTATTG
CTCAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACGGC
GTATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGACT
GTTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAA
ACGTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGC
TCATTGCCTAAATTGATTATTGTCGTTACAATAATATCTACAACAAATTATATAAACATT
AACATCTTTAAATAACGCAAGTAAATAACATCAAAATTTTTGCGCACTATTATTTCCAAC
TTAAAGCTGCAAAAATAAAAATTTCCCCCATCGAAAGCATAGAGAAATTAATATGAAATC
TTTCATATTTTTCTCACATAAGAACATTCAGTTAAAATAATTCAAAACGAGAAAACAATA
TAATTTATTTAAAATCGATACACACACTTTGTTTAGTCTATGTAGATCTTTTGATGGTTA
AAACCTTTAAAGTAATATAAACTGATTTAATATTTAAGCTGGCAATAACAGATTCAGGTA
CTCTCTCTCTCTATTTTCTTTAAAAAATATTCTGAGAATAGCTGTCCCTTTTATTTTATA
TTGATATTCATTTTTCGATAGCAAGCAGGTAGAAAAACGTAATAGACATTCCCATCAAGA
AAGAAAATAACAATTCTAAAGAAATTTAAAATCCTGATAAATAGCTTGCAAATGAAGGGA
TGAAAAATGCAATTTTAATGCATATTTTTAAAACTTTGAGTACCTGATGATAGCAAAAAA
TTGTTCTTGTCAGCTGACGATATTTCAAAGAAAAGTGGAAATTAAGCAATTTTCTTTTGG
CTATTAATTAAATTTTGAGCGCTTATAGTTTCAATACGACAAAATAAAATAATGATGAGC
GAGAAGAAGAATATCTATAATGCAATAGTATTTAAATGGATGCAACAACAACAACACACG
ATAAAGTGAAATTTTGTTTTAATTCTATTAATAGTGGACACACACAAGCGAATTCATTTT
TAAATAAATTATTTGTAAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAACCGATAA
AATTTAAATAAAAGTTCACAAAAAAATTAGAAAAACTAAAATTAGAAA

>g6957.t24 Gene=g6957 Length=135
MKSDGVIGLYRGFNVSVQGIIIYRAAYFGCYDTARGSLPDPKNSPFIVNFAIAQVVTISS
GILSYPFDTVRRRMMMQSGRAKEDVMYKNTLDCWVKISKQEGPKAFFKGALSNVFRGTGG
ALVLVFYDELKKLIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g6957.t24 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 1 134 3.6E-47
3 g6957.t24 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 2 134 9.5E-63
4 g6957.t24 PANTHER PTHR45635:SF7 ADP/ATP TRANSLOCASE 4 2 134 9.5E-63
6 g6957.t24 PRINTS PR00926 Mitochondrial carrier protein signature 10 28 3.5E-21
5 g6957.t24 PRINTS PR00926 Mitochondrial carrier protein signature 53 75 3.5E-21
2 g6957.t24 Pfam PF00153 Mitochondrial carrier protein 1 36 1.4E-7
1 g6957.t24 Pfam PF00153 Mitochondrial carrier protein 44 134 2.2E-17
10 g6957.t24 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 45 -
11 g6957.t24 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 46 67 -
9 g6957.t24 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 68 135 -
14 g6957.t24 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 1 37 12.065
15 g6957.t24 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 44 133 23.972
7 g6957.t24 SUPERFAMILY SSF103506 Mitochondrial carrier 2 130 4.58E-36
12 g6957.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 7 29 -
13 g6957.t24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 44 66 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values