Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t25 isoform g6957.t25 20173705 20177053
chr_2 g6957 g6957.t25 exon g6957.t25.exon1 20173705 20173964
chr_2 g6957 g6957.t25 TTS g6957.t25 20173716 20173716
chr_2 g6957 g6957.t25 exon g6957.t25.exon2 20174573 20174887
chr_2 g6957 g6957.t25 cds g6957.t25.CDS1 20174642 20174887
chr_2 g6957 g6957.t25 exon g6957.t25.exon3 20175915 20176411
chr_2 g6957 g6957.t25 cds g6957.t25.CDS2 20175915 20176411
chr_2 g6957 g6957.t25 exon g6957.t25.exon4 20176888 20177053
chr_2 g6957 g6957.t25 cds g6957.t25.CDS3 20176888 20177053
chr_2 g6957 g6957.t25 TSS g6957.t25 20177133 20177133

Sequences

>g6957.t25 Gene=g6957 Length=1238
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCT
CGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTT
GTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTC
AACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGACACA
GCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTGCTATTGCT
CAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACGGCGT
ATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGACTGT
TGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAAC
GTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGCTC
ATTGCCTAAATTGATTATTGTCGTTACAATAATATCTACAACAAATTATATAAACATTAA
CATCTTTAAATAACGCAATTTCAATACGACAAAATAAAATAATGATGAGCGAGAAGAAGA
ATATCTATAATGCAATAGTATTTAAATGGATGCAACAACAACAACACACGATAAAGTGAA
ATTTTGTTTTAATTCTATTAATAGTGGACACACACAAGCGAATTCATTTTTAAATAAATT
ATTTGTAAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAACCGATAAAATTTAAATA
AAAGTTCACAAAAAAATTAGAAAAACTAAAATTAGAAA

>g6957.t25 Gene=g6957 Length=302
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGGAAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGF
NVSVQGIIIYRAAYFGCYDTARGSLPDPKNSPFIVNFAIAQVVTISSGILSYPFDTVRRR
MMMQSGRAKEDVMYKNTLDCWVKISKQEGPKAFFKGALSNVFRGTGGALVLVFYDELKKL
IA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g6957.t25 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 301 2.3E-115
4 g6957.t25 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 301 3.6E-158
5 g6957.t25 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 301 3.6E-158
7 g6957.t25 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 6.3E-38
14 g6957.t25 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 3.4E-68
16 g6957.t25 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 3.4E-68
10 g6957.t25 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 6.3E-38
12 g6957.t25 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 3.4E-68
6 g6957.t25 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 6.3E-38
8 g6957.t25 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 6.3E-38
11 g6957.t25 PRINTS PR00926 Mitochondrial carrier protein signature 129 147 3.4E-68
13 g6957.t25 PRINTS PR00926 Mitochondrial carrier protein signature 177 195 3.4E-68
9 g6957.t25 PRINTS PR00927 Adenine nucleotide translocator signature 216 232 6.3E-38
15 g6957.t25 PRINTS PR00926 Mitochondrial carrier protein signature 220 242 3.4E-68
3 g6957.t25 Pfam PF00153 Mitochondrial carrier protein 9 103 1.8E-24
2 g6957.t25 Pfam PF00153 Mitochondrial carrier protein 114 203 2.9E-23
1 g6957.t25 Pfam PF00153 Mitochondrial carrier protein 211 301 1.6E-16
20 g6957.t25 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 174 -
22 g6957.t25 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 175 193 -
21 g6957.t25 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 194 212 -
23 g6957.t25 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 213 234 -
19 g6957.t25 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 235 302 -
26 g6957.t25 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
28 g6957.t25 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 114 204 27.705
27 g6957.t25 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 211 300 23.972
17 g6957.t25 SUPERFAMILY SSF103506 Mitochondrial carrier 7 296 9.94E-85
24 g6957.t25 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 115 137 -
25 g6957.t25 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 212 234 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values