General information for g6957.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ADP,ATP carrier protein 1.
Parent gene
- The parent gene g6957 is located on chr_2: 20176068..20177053 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6957 | g6957.t28 | TTS | g6957.t28 | 20173716 | 20173716 |
| chr_2 | g6957 | g6957.t28 | isoform | g6957.t28 | 20173724 | 20176045 |
| chr_2 | g6957 | g6957.t28 | exon | g6957.t28.exon1 | 20173724 | 20174873 |
| chr_2 | g6957 | g6957.t28 | cds | g6957.t28.CDS1 | 20174642 | 20174873 |
| chr_2 | g6957 | g6957.t28 | exon | g6957.t28.exon2 | 20175915 | 20176045 |
| chr_2 | g6957 | g6957.t28 | cds | g6957.t28.CDS2 | 20175915 | 20175985 |
| chr_2 | g6957 | g6957.t28 | TSS | g6957.t28 | NA | NA |
Sequences
>g6957.t28 Gene=g6957 Length=1281
GTGGTTTCAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCT
ATGACACAGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTG
CTATTGCTCAGGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACGGCGTATGATG
ATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGACTGTTGGGTT
AAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAACGTTTTC
CGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGCTCATTGCC
TAAATTGATTATTGTCGTTACAATAATATCTACAACAAATTATATAAACATTAACATCTT
TAAATAACGCAAGTAAATAACATCAAAATTTTTGCGCACTATTATTTCCAACTTAAAGCT
GCAAAAATAAAAATTTCCCCCATCGAAAGCATAGAGAAATTAATATGAAATCTTTCATAT
TTTTCTCACATAAGAACATTCAGTTAAAATAATTCAAAACGAGAAAACAATATAATTTAT
TTAAAATCGATACACACACTTTGTTTAGTCTATGTAGATCTTTTGATGGTTAAAACCTTT
AAAGTAATATAAACTGATTTAATATTTAAGCTGGCAATAACAGATTCAGGTACTCTCTCT
CTCTATTTTCTTTAAAAAATATTCTGAGAATAGCTGTCCCTTTTATTTTATATTGATATT
CATTTTTCGATAGCAAGCAGGTAGAAAAACGTAATAGACATTCCCATCAAGAAAGAAAAT
AACAATTCTAAAGAAATTTAAAATCCTGATAAATAGCTTGCAAATGAAGGGATGAAAAAT
GCAATTTTAATGCATATTTTTAAAACTTTGAGTACCTGATGATAGCAAAAAATTGTTCTT
GTCAGCTGACGATATTTCAAAGAAAAGTGGAAATTAAGCAATTTTCTTTTGGCTATTAAT
TAAATTTTGAGCGCTTATAGTTTCAATACGACAAAATAAAATAATGATGAGCGAGAAGAA
GAATATCTATAATGCAATAGTATTTAAATGGATGCAACAACAACAACACACGATAAAGTG
AAATTTTGTTTTAATTCTATTAATAGTGGACACACACAAGCGAATTCATTTTTAAATAAA
TTATTTGTAAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAACCGATAAAATTTAAA
TAAAAGTTCACAAAAAAATTA
>g6957.t28 Gene=g6957 Length=100
MTQLVDHCLIQRIHHSLSTLLLLRSGILSYPFDTVRRRMMMQSGRAKEDVMYKNTLDCWV
KISKQEGPKAFFKGALSNVFRGTGGALVLVFYDELKKLIA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6957.t28 | Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 4 | 99 | 2.2E-26 |
| 2 | g6957.t28 | PANTHER | PTHR45635 | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 20 | 99 | 2.5E-33 |
| 3 | g6957.t28 | PANTHER | PTHR45635:SF17 | ADENINE NUCLEOTIDE TRANSLOCATOR | 20 | 99 | 2.5E-33 |
| 1 | g6957.t28 | Pfam | PF00153 | Mitochondrial carrier protein | 25 | 99 | 7.6E-16 |
| 8 | g6957.t28 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 9 | g6957.t28 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 32 | - |
| 7 | g6957.t28 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 33 | 100 | - |
| 6 | g6957.t28 | ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 17 | 98 | 21.762 |
| 4 | g6957.t28 | SUPERFAMILY | SSF103506 | Mitochondrial carrier | 25 | 95 | 5.62E-20 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0140021 | mitochondrial ADP transmembrane transport | BP |
| GO:1990544 | mitochondrial ATP transmembrane transport | BP |
| GO:0005471 | ATP:ADP antiporter activity | MF |
| GO:0005743 | mitochondrial inner membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed