Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t33 TTS g6957.t33 20173716 20173716
chr_2 g6957 g6957.t33 isoform g6957.t33 20173748 20177053
chr_2 g6957 g6957.t33 exon g6957.t33.exon1 20173748 20174759
chr_2 g6957 g6957.t33 cds g6957.t33.CDS1 20174642 20174759
chr_2 g6957 g6957.t33 exon g6957.t33.exon2 20176051 20176411
chr_2 g6957 g6957.t33 cds g6957.t33.CDS2 20176051 20176411
chr_2 g6957 g6957.t33 exon g6957.t33.exon3 20176888 20177053
chr_2 g6957 g6957.t33 cds g6957.t33.CDS3 20176888 20177053
chr_2 g6957 g6957.t33 TSS g6957.t33 20177133 20177133

Sequences

>g6957.t33 Gene=g6957 Length=1539
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCT
CGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTT
GTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTCTCCAAACAAGAA
GGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAACGTTTTCCGTGGTACTGGTGGTGCA
CTTGTATTGGTCTTCTACGACGAACTTAAGAAGCTCATTGCCTAAATTGATTATTGTCGT
TACAATAATATCTACAACAAATTATATAAACATTAACATCTTTAAATAACGCAAGTAAAT
AACATCAAAATTTTTGCGCACTATTATTTCCAACTTAAAGCTGCAAAAATAAAAATTTCC
CCCATCGAAAGCATAGAGAAATTAATATGAAATCTTTCATATTTTTCTCACATAAGAACA
TTCAGTTAAAATAATTCAAAACGAGAAAACAATATAATTTATTTAAAATCGATACACACA
CTTTGTTTAGTCTATGTAGATCTTTTGATGGTTAAAACCTTTAAAGTAATATAAACTGAT
TTAATATTTAAGCTGGCAATAACAGATTCAGGTACTCTCTCTCTCTATTTTCTTTAAAAA
ATATTCTGAGAATAGCTGTCCCTTTTATTTTATATTGATATTCATTTTTCGATAGCAAGC
AGGTAGAAAAACGTAATAGACATTCCCATCAAGAAAGAAAATAACAATTCTAAAGAAATT
TAAAATCCTGATAAATAGCTTGCAAATGAAGGGATGAAAAATGCAATTTTAATGCATATT
TTTAAAACTTTGAGTACCTGATGATAGCAAAAAATTGTTCTTGTCAGCTGACGATATTTC
AAAGAAAAGTGGAAATTAAGCAATTTTCTTTTGGCTATTAATTAAATTTTGAGCGCTTAT
AGTTTCAATACGACAAAATAAAATAATGATGAGCGAGAAGAAGAATATCTATAATGCAAT
AGTATTTAAATGGATGCAACAACAACAACACACGATAAAGTGAAATTTTGTTTTAATTCT
ATTAATAGTGGACACACACAAGCGAATTCATTTTTAAATAAATTATTTGTAAGATTCTCA
AAATTGGCATGTTTGAGATCTTGGAAACCGATAAAATTT

>g6957.t33 Gene=g6957 Length=214
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGGAAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGFSKQE
GPKAFFKGALSNVFRGTGGALVLVFYDELKKLIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g6957.t33 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 177 0.0000000
16 g6957.t33 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 178 213 0.0000025
3 g6957.t33 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 176 0.0000000
5 g6957.t33 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 176 0.0000000
4 g6957.t33 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 177 213 0.0000000
6 g6957.t33 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 177 213 0.0000000
8 g6957.t33 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 0.0000000
13 g6957.t33 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 0.0000000
14 g6957.t33 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 0.0000000
10 g6957.t33 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 0.0000000
12 g6957.t33 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 0.0000000
7 g6957.t33 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 0.0000000
9 g6957.t33 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 0.0000000
11 g6957.t33 PRINTS PR00926 Mitochondrial carrier protein signature 129 147 0.0000000
2 g6957.t33 Pfam PF00153 Mitochondrial carrier protein 9 103 0.0000000
1 g6957.t33 Pfam PF00153 Mitochondrial carrier protein 114 213 0.0000000
18 g6957.t33 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.7690000
19 g6957.t33 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 114 212 22.4270000
15 g6957.t33 SUPERFAMILY SSF103506 Mitochondrial carrier 7 208 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values