Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t36 TTS g6957.t36 20173716 20173716
chr_2 g6957 g6957.t36 isoform g6957.t36 20174175 20177053
chr_2 g6957 g6957.t36 exon g6957.t36.exon1 20174175 20174887
chr_2 g6957 g6957.t36 cds g6957.t36.CDS1 20174642 20174887
chr_2 g6957 g6957.t36 exon g6957.t36.exon2 20175936 20176411
chr_2 g6957 g6957.t36 cds g6957.t36.CDS2 20175936 20176411
chr_2 g6957 g6957.t36 exon g6957.t36.exon3 20176888 20177053
chr_2 g6957 g6957.t36 cds g6957.t36.CDS3 20176888 20177053
chr_2 g6957 g6957.t36 TSS g6957.t36 20177133 20177133

Sequences

>g6957.t36 Gene=g6957 Length=1355
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCT
CGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTT
GTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTC
AACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGACACA
GCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTTGTCACAATTTCGTCT
GGTATCTTGTCATATCCATTCGACACTGTCAGACGGCGTATGATGATGCAGTCAGGTCGT
GCTAAGGAAGATGTTATGTACAAGAACACATTGGACTGTTGGGTTAAAATCTCCAAACAA
GAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAACGTTTTCCGTGGTACTGGTGGT
GCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGCTCATTGCCTAAATTGATTATTGT
CGTTACAATAATATCTACAACAAATTATATAAACATTAACATCTTTAAATAACGCAAGTA
AATAACATCAAAATTTTTGCGCACTATTATTTCCAACTTAAAGCTGCAAAAATAAAAATT
TCCCCCATCGAAAGCATAGAGAAATTAATATGAAATCTTTCATATTTTTCTCACATAAGA
ACATTCAGTTAAAATAATTCAAAACGAGAAAACAATATAATTTATTTAAAATCGATACAC
ACACTTTGTTTAGTCTATGTAGATCTTTTGATGGTTAAAACCTTTAAAGTAATATAAACT
GATTTAATATTTAAGCTGGCAATAACAGATTCAGGTACTCTCTCTCTCTATTTTCTTTAA
AAAATATTCTGAGAATAGCTGTCCCTTTTATTTTATATTGATATTCATTTTTCGATAGCA
AGCAGGTAGAAAAACGTAATAGACATTCCCATCAA

>g6957.t36 Gene=g6957 Length=295
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGGAAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGF
NVSVQGIIIYRAAYFGCYDTARGSLPDPKNSPFIVVTISSGILSYPFDTVRRRMMMQSGR
AKEDVMYKNTLDCWVKISKQEGPKAFFKGALSNVFRGTGGALVLVFYDELKKLIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g6957.t36 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 294 5.4E-111
4 g6957.t36 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 294 6.4E-152
5 g6957.t36 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 294 6.4E-152
7 g6957.t36 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 1.2E-32
14 g6957.t36 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 3.1E-54
15 g6957.t36 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 3.1E-54
10 g6957.t36 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 1.2E-32
12 g6957.t36 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 3.1E-54
6 g6957.t36 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 1.2E-32
8 g6957.t36 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 1.2E-32
11 g6957.t36 PRINTS PR00926 Mitochondrial carrier protein signature 129 147 3.1E-54
13 g6957.t36 PRINTS PR00926 Mitochondrial carrier protein signature 177 195 3.1E-54
9 g6957.t36 PRINTS PR00927 Adenine nucleotide translocator signature 209 225 1.2E-32
3 g6957.t36 Pfam PF00153 Mitochondrial carrier protein 9 103 1.7E-24
1 g6957.t36 Pfam PF00153 Mitochondrial carrier protein 114 203 2.8E-23
2 g6957.t36 Pfam PF00153 Mitochondrial carrier protein 218 294 4.1E-15
19 g6957.t36 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 174 -
21 g6957.t36 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 175 193 -
20 g6957.t36 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 194 212 -
22 g6957.t36 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 213 230 -
18 g6957.t36 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 231 295 -
27 g6957.t36 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
28 g6957.t36 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 114 204 27.705
26 g6957.t36 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 211 293 21.698
16 g6957.t36 SUPERFAMILY SSF103506 Mitochondrial carrier 7 289 2.09E-81
23 g6957.t36 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 112 134 -
24 g6957.t36 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 173 195 -
25 g6957.t36 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 210 227 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values