Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t39 TTS g6957.t39 20173716 20173716
chr_2 g6957 g6957.t39 isoform g6957.t39 20174642 20177053
chr_2 g6957 g6957.t39 exon g6957.t39.exon1 20174642 20174887
chr_2 g6957 g6957.t39 cds g6957.t39.CDS1 20174642 20174887
chr_2 g6957 g6957.t39 exon g6957.t39.exon2 20175915 20176147
chr_2 g6957 g6957.t39 cds g6957.t39.CDS2 20175915 20176147
chr_2 g6957 g6957.t39 exon g6957.t39.exon3 20176211 20176411
chr_2 g6957 g6957.t39 cds g6957.t39.CDS3 20176211 20176411
chr_2 g6957 g6957.t39 exon g6957.t39.exon4 20176888 20177053
chr_2 g6957 g6957.t39 cds g6957.t39.CDS4 20176888 20177053
chr_2 g6957 g6957.t39 TSS g6957.t39 20177133 20177133

Sequences

>g6957.t39 Gene=g6957 Length=846
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTTGTT
GATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTCAAC
GTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGACACAGCT
CGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTGCTATTGCTCAG
GTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACGGCGTATG
ATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGACTGTTGG
GTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAACGTT
TTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGCTCATT
GCCTAA

>g6957.t39 Gene=g6957 Length=281
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSVGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGFNVSVQGIIIYRAAYFGCYDTA
RGSLPDPKNSPFIVNFAIAQVVTISSGILSYPFDTVRRRMMMQSGRAKEDVMYKNTLDCW
VKISKQEGPKAFFKGALSNVFRGTGGALVLVFYDELKKLIA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g6957.t39 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 123 1.4E-40
19 g6957.t39 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 124 280 9.5E-55
4 g6957.t39 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 125 3.3E-135
6 g6957.t39 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 125 3.3E-135
5 g6957.t39 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 123 280 3.3E-135
7 g6957.t39 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 123 280 3.3E-135
9 g6957.t39 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 2.1E-33
15 g6957.t39 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 4.6E-43
16 g6957.t39 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 4.6E-43
12 g6957.t39 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 2.1E-33
13 g6957.t39 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 4.6E-43
8 g6957.t39 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 2.1E-33
11 g6957.t39 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 2.1E-33
10 g6957.t39 PRINTS PR00927 Adenine nucleotide translocator signature 195 211 2.1E-33
14 g6957.t39 PRINTS PR00926 Mitochondrial carrier protein signature 199 221 4.6E-43
3 g6957.t39 Pfam PF00153 Mitochondrial carrier protein 9 103 1.6E-24
2 g6957.t39 Pfam PF00153 Mitochondrial carrier protein 131 182 2.3E-12
1 g6957.t39 Pfam PF00153 Mitochondrial carrier protein 190 280 1.4E-16
21 g6957.t39 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 153 -
23 g6957.t39 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 154 172 -
22 g6957.t39 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 173 191 -
24 g6957.t39 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 192 213 -
20 g6957.t39 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 214 281 -
29 g6957.t39 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
28 g6957.t39 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 109 183 14.854
27 g6957.t39 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 190 279 23.972
17 g6957.t39 SUPERFAMILY SSF103506 Mitochondrial carrier 7 275 5.1E-72
26 g6957.t39 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 154 176 -
25 g6957.t39 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 191 213 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values