Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t41 TTS g6957.t41 20173716 20173716
chr_2 g6957 g6957.t41 isoform g6957.t41 20174642 20177053
chr_2 g6957 g6957.t41 exon g6957.t41.exon1 20174642 20174837
chr_2 g6957 g6957.t41 exon g6957.t41.exon2 20175915 20176411
chr_2 g6957 g6957.t41 cds g6957.t41.CDS1 20176073 20176411
chr_2 g6957 g6957.t41 exon g6957.t41.exon3 20176934 20177053
chr_2 g6957 g6957.t41 cds g6957.t41.CDS2 20176934 20177053
chr_2 g6957 g6957.t41 TSS g6957.t41 20177133 20177133

Sequences

>g6957.t41 Gene=g6957 Length=813
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTATCATCGATTGCTTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTG
GTAACTTGGCTAATGTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGG
ATGTCTACAAACAAATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACT
TCTTTGGTAACTTGGGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATC
CATTGGATTATGCTCGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTC
AATACACTGGTCTTGTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGAT
TGTATCGTGGTTTCAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCG
GTTGCTATGACACAGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCA
ACTTTGCTATTGCTCAGACGGCGTATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTT
ATGTACAAGAACACATTGGACTGTTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCC
TTCTTCAAGGGTGCATTGTCAAACGTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTC
TTCTACGACGAACTTAAGAAGCTCATTGCCTAA

>g6957.t41 Gene=g6957 Length=152
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVSSIASSVFQKNKVLLLSGV
VTWLMSSDISQLRPLTSLLRMSTNKFSWVVLIKRHNSGVTSLVTWVQVVPLVLLHFALSI
HWIMLVHVWALMLVKEQQTVNTLVLLIASRRQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g6957.t41 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 4 67 1.8E-9
2 g6957.t41 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 7.1E-14
3 g6957.t41 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 7.1E-14
1 g6957.t41 Pfam PF00153 Mitochondrial carrier protein 9 52 3.6E-7
8 g6957.t41 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 53 -
11 g6957.t41 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 54 72 -
9 g6957.t41 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 73 111 -
10 g6957.t41 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 112 134 -
7 g6957.t41 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 135 152 -
5 g6957.t41 SUPERFAMILY SSF103506 Mitochondrial carrier 7 48 7.32E-9
4 g6957.t41 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 102 124 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed