Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t42 TTS g6957.t42 20173716 20173716
chr_2 g6957 g6957.t42 isoform g6957.t42 20174642 20177053
chr_2 g6957 g6957.t42 exon g6957.t42.exon1 20174642 20174887
chr_2 g6957 g6957.t42 cds g6957.t42.CDS1 20174805 20174887
chr_2 g6957 g6957.t42 exon g6957.t42.exon2 20176022 20176411
chr_2 g6957 g6957.t42 cds g6957.t42.CDS2 20176022 20176411
chr_2 g6957 g6957.t42 exon g6957.t42.exon3 20176888 20177053
chr_2 g6957 g6957.t42 cds g6957.t42.CDS3 20176888 20177053
chr_2 g6957 g6957.t42 TSS g6957.t42 20177133 20177133

Sequences

>g6957.t42 Gene=g6957 Length=802
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCT
CGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTT
GTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTC
AACGTTTCAGTACAAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACAC
TGTCAGACGGCGTATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAA
CACATTGGACTGTTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGG
TGCATTGTCAAACGTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGA
ACTTAAGAAGCTCATTGCCTAA

>g6957.t42 Gene=g6957 Length=212
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGGAAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGF
NVSVQGCHNFVWYLVISIRHCQTAYDDAVRSC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g6957.t42 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 207 4.3E-70
3 g6957.t42 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 187 3.6E-97
4 g6957.t42 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 187 3.6E-97
6 g6957.t42 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 3.3E-31
12 g6957.t42 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 1.0E-45
13 g6957.t42 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 1.0E-45
8 g6957.t42 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 3.3E-31
10 g6957.t42 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 1.0E-45
5 g6957.t42 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 3.3E-31
7 g6957.t42 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 3.3E-31
9 g6957.t42 PRINTS PR00926 Mitochondrial carrier protein signature 129 147 1.0E-45
11 g6957.t42 PRINTS PR00926 Mitochondrial carrier protein signature 177 195 1.0E-45
2 g6957.t42 Pfam PF00153 Mitochondrial carrier protein 9 103 8.3E-25
1 g6957.t42 Pfam PF00153 Mitochondrial carrier protein 114 186 3.3E-17
18 g6957.t42 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
19 g6957.t42 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 114 204 19.681
16 g6957.t42 SUPERFAMILY SSF103506 Mitochondrial carrier 7 191 1.83E-51
15 g6957.t42 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 115 137 -
14 g6957.t42 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 174 196 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values