Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t43 TTS g6957.t43 20173716 20173716
chr_2 g6957 g6957.t43 isoform g6957.t43 20174642 20177053
chr_2 g6957 g6957.t43 exon g6957.t43.exon1 20174642 20174887
chr_2 g6957 g6957.t43 exon g6957.t43.exon2 20175915 20176166
chr_2 g6957 g6957.t43 cds g6957.t43.CDS1 20176138 20176166
chr_2 g6957 g6957.t43 exon g6957.t43.exon3 20176226 20176411
chr_2 g6957 g6957.t43 cds g6957.t43.CDS2 20176226 20176411
chr_2 g6957 g6957.t43 exon g6957.t43.exon4 20176888 20177053
chr_2 g6957 g6957.t43 cds g6957.t43.CDS3 20176888 20177053
chr_2 g6957 g6957.t43 TSS g6957.t43 20177133 20177133

Sequences

>g6957.t43 Gene=g6957 Length=850
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGATTATGC
TCGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCT
TGTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTT
CAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCTATGACAC
AGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTGCTATTGC
TCAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCAGACGGCG
TATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACATTGGACTG
TTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCATTGTCAAA
CGTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTAAGAAGCT
CATTGCCTAA

>g6957.t43 Gene=g6957 Length=126
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGLC
SYTFGR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g6957.t43 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 125 0.000
2 g6957.t43 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 9 118 0.000
3 g6957.t43 PANTHER PTHR45635:SF3 ADP/ATP TRANSLOCASE 2 9 118 0.000
5 g6957.t43 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 0.000
8 g6957.t43 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 0.000
9 g6957.t43 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 0.000
6 g6957.t43 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 0.000
7 g6957.t43 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 0.000
4 g6957.t43 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 0.000
1 g6957.t43 Pfam PF00153 Mitochondrial carrier protein 9 103 0.000
12 g6957.t43 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
10 g6957.t43 SUPERFAMILY SSF103506 Mitochondrial carrier 7 116 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values