Gene loci information

Transcript annotation

  • This transcript has been annotated as ADP,ATP carrier protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6957 g6957.t44 isoform g6957.t44 20176007 20177053
chr_2 g6957 g6957.t44 exon g6957.t44.exon1 20176007 20176411
chr_2 g6957 g6957.t44 cds g6957.t44.CDS1 20176008 20176411
chr_2 g6957 g6957.t44 exon g6957.t44.exon2 20176888 20177053
chr_2 g6957 g6957.t44 cds g6957.t44.CDS2 20176888 20177053
chr_2 g6957 g6957.t44 TSS g6957.t44 20177133 20177133
chr_2 g6957 g6957.t44 TTS g6957.t44 NA NA

Sequences

>g6957.t44 Gene=g6957 Length=571
ATGGGAGGCAAAGCTAAAGATCCAATGTCCTTTGCTAAGGATTTTCTCGCTGGTGGTATC
TCAGCTGCTGTCTCAAAAACAGCTGTTGCTCCAATTGAACGTGTCAAATTGATTCTTCAA
GTACAAGCCGCTAACAAGCAAGTCGTTGCTGGAAAGGAATACAAAGGTATCATCGATTGC
TTCGTCCGTATTCCAAAAGAACAAGGTGTTGCTGCTTTCTGGCGTGGTAACTTGGCTAAT
GTCATCAGATATTTCCCAACTCAGGCCCTTAACTTCGCTTTTAAGGATGTCTACAAACAA
ATTTTCTTGGGTGGTGTTGATCAAAAGACACAATTCTGGCGTTACTTCTTTGGTAACTTG
GGTTCAGGTGGTGCCGCTGGTGCTACTTCACTTTGCTTTGTCTATCCATTGGATTATGCT
CGTACACGTTTGGGCGCTGATGTTGGTAAAGGAACAGCAGACCGTCAATACACTGGTCTT
GTTGATTGCATCAAGAAGACAATGAAATCAGACGGTGTCATTGGATTGTATCGTGGTTTC
AACGTTTCAGTACAAGGTATTATCATTTACC

>g6957.t44 Gene=g6957 Length=190
MGGKAKDPMSFAKDFLAGGISAAVSKTAVAPIERVKLILQVQAANKQVVAGKEYKGIIDC
FVRIPKEQGVAAFWRGNLANVIRYFPTQALNFAFKDVYKQIFLGGVDQKTQFWRYFFGNL
GSGGAAGATSLCFVYPLDYARTRLGADVGKGTADRQYTGLVDCIKKTMKSDGVIGLYRGF
NVSVQGIIIY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6957.t44 Gene3D G3DSA:1.50.40.10 Mitochondrial carrier domain 6 190 0.000
3 g6957.t44 PANTHER PTHR45635 ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 8 190 0.000
4 g6957.t44 PANTHER PTHR45635:SF32 ADP/ATP TRANSLOCASE 1 8 190 0.000
6 g6957.t44 PRINTS PR00927 Adenine nucleotide translocator signature 11 23 0.000
11 g6957.t44 PRINTS PR00926 Mitochondrial carrier protein signature 14 27 0.000
13 g6957.t44 PRINTS PR00926 Mitochondrial carrier protein signature 27 41 0.000
8 g6957.t44 PRINTS PR00927 Adenine nucleotide translocator signature 54 75 0.000
10 g6957.t44 PRINTS PR00926 Mitochondrial carrier protein signature 76 96 0.000
5 g6957.t44 PRINTS PR00927 Adenine nucleotide translocator signature 87 99 0.000
7 g6957.t44 PRINTS PR00927 Adenine nucleotide translocator signature 114 127 0.000
9 g6957.t44 PRINTS PR00926 Mitochondrial carrier protein signature 129 147 0.000
12 g6957.t44 PRINTS PR00926 Mitochondrial carrier protein signature 177 190 0.000
2 g6957.t44 Pfam PF00153 Mitochondrial carrier protein 9 103 0.000
1 g6957.t44 Pfam PF00153 Mitochondrial carrier protein 114 190 0.000
16 g6957.t44 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 9 101 27.769
17 g6957.t44 ProSiteProfiles PS50920 Solute carrier (Solcar) repeat profile. 114 190 21.676
14 g6957.t44 SUPERFAMILY SSF103506 Mitochondrial carrier 7 190 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0140021 mitochondrial ADP transmembrane transport BP
GO:1990544 mitochondrial ATP transmembrane transport BP
GO:0055085 transmembrane transport BP
GO:0005471 ATP:ADP antiporter activity MF
GO:0005743 mitochondrial inner membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values