General information for g6957.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative ADP,ATP carrier protein 1.
Parent gene
- The parent gene g6957 is located on chr_2: 20176068..20177053 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6957 | g6957.t8 | isoform | g6957.t8 | 20173705 | 20176045 |
| chr_2 | g6957 | g6957.t8 | exon | g6957.t8.exon1 | 20173705 | 20173964 |
| chr_2 | g6957 | g6957.t8 | TTS | g6957.t8 | 20173716 | 20173716 |
| chr_2 | g6957 | g6957.t8 | exon | g6957.t8.exon2 | 20174573 | 20174887 |
| chr_2 | g6957 | g6957.t8 | cds | g6957.t8.CDS1 | 20174642 | 20174830 |
| chr_2 | g6957 | g6957.t8 | exon | g6957.t8.exon3 | 20175915 | 20176045 |
| chr_2 | g6957 | g6957.t8 | TSS | g6957.t8 | NA | NA |
Sequences
>g6957.t8 Gene=g6957 Length=706
GTGGTTTCAACGTTTCAGTACAAGGTATTATCATTTACCGTGCTGCATACTTCGGTTGCT
ATGACACAGCTCGTGGATCATTGCCTGATCCAAAGAATTCACCATTCATTGTCAACTTTG
CTATTGCTCAGGTTGTCACAATTTCGTCTGGTATCTTGTCATATCCATTCGACACTGTCA
GACGGCGTATGATGATGCAGTCAGGTCGTGCTAAGGAAGATGTTATGTACAAGAACACAT
TGGACTGTTGGGTTAAAATCTCCAAACAAGAAGGACCAAAAGCCTTCTTCAAGGGTGCAT
TGTCAAACGTTTTCCGTGGTACTGGTGGTGCACTTGTATTGGTCTTCTACGACGAACTTA
AGAAGCTCATTGCCTAAATTGATTATTGTCGTTACAATAATATCTACAACAAATTATATA
AACATTAACATCTTTAAATAACGCAATTTCAATACGACAAAATAAAATAATGATGAGCGA
GAAGAAGAATATCTATAATGCAATAGTATTTAAATGGATGCAACAACAACAACACACGAT
AAAGTGAAATTTTGTTTTAATTCTATTAATAGTGGACACACACAAGCGAATTCATTTTTA
AATAAATTATTTGTAAGATTCTCAAAATTGGCATGTTTGAGATCTTGGAAACCGATAAAA
TTTAAATAAAAGTTCACAAAAAAATTAGAAAAACTAAAATTAGAAA
>g6957.t8 Gene=g6957 Length=62
MMMQSGRAKEDVMYKNTLDCWVKISKQEGPKAFFKGALSNVFRGTGGALVLVFYDELKKL
IA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6957.t8 | Gene3D | G3DSA:1.50.40.10 | Mitochondrial carrier domain | 1 | 61 | 0.000 |
| 2 | g6957.t8 | PANTHER | PTHR45635:SF13 | ADP/ATP TRANSLOCASE 3 | 1 | 61 | 0.000 |
| 3 | g6957.t8 | PANTHER | PTHR45635 | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED | 1 | 61 | 0.000 |
| 1 | g6957.t8 | Pfam | PF00153 | Mitochondrial carrier protein | 3 | 61 | 0.000 |
| 6 | g6957.t8 | ProSiteProfiles | PS50920 | Solute carrier (Solcar) repeat profile. | 1 | 60 | 16.463 |
| 4 | g6957.t8 | SUPERFAMILY | SSF103506 | Mitochondrial carrier | 1 | 57 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0140021 | mitochondrial ADP transmembrane transport | BP |
| GO:1990544 | mitochondrial ATP transmembrane transport | BP |
| GO:0005471 | ATP:ADP antiporter activity | MF |
| GO:0005743 | mitochondrial inner membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
