Gene loci information

Transcript annotation

  • This transcript has been annotated as Translocation protein SEC63-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6958 g6958.t3 TSS g6958.t3 20177488 20177488
chr_2 g6958 g6958.t3 isoform g6958.t3 20177551 20179174
chr_2 g6958 g6958.t3 exon g6958.t3.exon1 20177551 20177674
chr_2 g6958 g6958.t3 cds g6958.t3.CDS1 20177551 20177674
chr_2 g6958 g6958.t3 exon g6958.t3.exon2 20177819 20179174
chr_2 g6958 g6958.t3 cds g6958.t3.CDS2 20177819 20179173
chr_2 g6958 g6958.t3 TTS g6958.t3 NA NA

Sequences

>g6958.t3 Gene=g6958 Length=1480
ATGGGACAAAAATTTCAATATGATGAAAGTGGGAGCACTTTCTTTTATTTCATCCTTTCA
TTCCTAGCATTGATTTTAATTCCCGCGACGTTTTATTTTTGGCCAACTCGAAAGAAATCA
GAAGATCCCAACAAAGCTAAAGAAGAATGTCAATGTGAAGGATGCTGTGAAAAGCGAGTA
ATAATAGCGAATATTGATCCATATAAAAATTTAAAATCTCTAGCTGTAAAAGCTTCACTA
GTTTTTGGATGGATGCTACTTATATTTCTAGCTTATAAAGTTTCTCAATTTGATTATGAA
ATGTCAAATTTTGATCCCTATGAAATTTTGGGTGTACCTATTGGTTCATCAAAAGCAGAA
GTAAAGAAAGCATATTTCAAACTTTCTACAATTTGGCATCCTGATAAAAATACTGGTGAT
GAAAAAGTTTTCGTAAAATTAACAAAAGCTTATAAAGCATTGACTGACGACGAGGCTCGT
AAAAATTGGGAAAAGTATGGCAATCCTGATGGTCCAGCAGCAATGTCATTTGGAATCGCA
TTACCTTCATGGATAGTTGAAAAAGAAAATTCTGTTTGGGTGCTTGGTCTTTATGCGCTT
GTATTTATGGTAGCATTACCAATTGCTGTTGGCACATGGTGGTATCGAAGTATTCGTTTT
AGTGGTGACAAAGTTCTTCTTGATACAACACAACTATATTTTTACTTTTTTCACAAAACT
CCGAATATGGCTTTAAAGCGCGTCATTATGATTCTGGCAGCATCATTAGAATTCGATAAG
CGTCACAATTCACAAGTCACAGAGCGACCAACAGATAATGAAGAAGTTCCGTCACTAATT
AAGCAACTGCCGCATTTAAATGAAAAATGCAAGGAACTTCCTCTTTGTCGTAACTATTCT
GTAAAAACTAGAGCACTTATTCACGCACATTTGAGTCGACTACCGTTAAACCCTAACACA
CTAGAAAAAGATAGACAATTTGTGTTAAGAAAATGCCCTTATTTAGTTCAAGAGATGGTT
TCTGTTGTCAATCAGCTCATTATGCTCGCATATGCTGGAAGAATATCAGCATCAAAATTG
CCACCAATTGAAACTATTGAAAATTGTATGAAACTCTCACCAATGCTTATTCAAGGTTTA
TGGGAATTCAAATCACCTTTACTGCAATTACCGCATTTAACTGAAGACAATTTGAAATAT
TTTGTTAACAAGAAGCGTTACATAAAAAGTCTTCAACAATTTGCAAAGCTTCCCGAGAGT
GAGAGTCGTAGTTTATTGCGTGATTTTACTGATGAGGAGTATTCAAATGTTATCAAAGTT
CTAAGTAAAATGCCTCTCATTGATTTTAGTATCAAAGTTGAAGTTGTTGATGATGAAAAT
AGTAATGTTGTGACAGCTGGAGCGATCGTTACTGTCACAGTGAATCTTGTTCGAAGAAAT
ATGAGTGATCTTTTTGGAGATTCTTCAGCTGCAGAAAAGC

>g6958.t3 Gene=g6958 Length=493
MGQKFQYDESGSTFFYFILSFLALILIPATFYFWPTRKKSEDPNKAKEECQCEGCCEKRV
IIANIDPYKNLKSLAVKASLVFGWMLLIFLAYKVSQFDYEMSNFDPYEILGVPIGSSKAE
VKKAYFKLSTIWHPDKNTGDEKVFVKLTKAYKALTDDEARKNWEKYGNPDGPAAMSFGIA
LPSWIVEKENSVWVLGLYALVFMVALPIAVGTWWYRSIRFSGDKVLLDTTQLYFYFFHKT
PNMALKRVIMILAASLEFDKRHNSQVTERPTDNEEVPSLIKQLPHLNEKCKELPLCRNYS
VKTRALIHAHLSRLPLNPNTLEKDRQFVLRKCPYLVQEMVSVVNQLIMLAYAGRISASKL
PPIETIENCMKLSPMLIQGLWEFKSPLLQLPHLTEDNLKYFVNKKRYIKSLQQFAKLPES
ESRSLLRDFTDEEYSNVIKVLSKMPLIDFSIKVEVVDDENSNVVTAGAIVTVTVNLVRRN
MSDLFGDSSAAEK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g6958.t3 CDD cd06257 DnaJ 105 156 8.62471E-17
10 g6958.t3 Gene3D G3DSA:1.10.287.110 - 99 176 8.8E-20
9 g6958.t3 Gene3D G3DSA:1.10.3380.10 - 244 382 9.6E-13
3 g6958.t3 PANTHER PTHR24075 SEC63 DOMAIN-CONTAINING 3 473 3.1E-135
4 g6958.t3 PANTHER PTHR24075:SF0 TRANSLOCATION PROTEIN SEC63 HOMOLOG 3 473 3.1E-135
6 g6958.t3 PRINTS PR00625 DnaJ domain signature 107 125 2.1E-7
5 g6958.t3 PRINTS PR00625 DnaJ domain signature 125 140 2.1E-7
2 g6958.t3 Pfam PF00226 DnaJ domain 105 163 1.2E-16
1 g6958.t3 Pfam PF02889 Sec63 Brl domain 238 475 6.5E-12
13 g6958.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 13 -
16 g6958.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 14 34 -
11 g6958.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 35 73 -
15 g6958.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 92 -
14 g6958.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 93 191 -
17 g6958.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 192 215 -
12 g6958.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 216 493 -
23 g6958.t3 ProSiteProfiles PS50076 dnaJ domain profile. 105 167 17.71
22 g6958.t3 SMART SM00271 dnaj_3 104 159 1.3E-18
8 g6958.t3 SUPERFAMILY SSF46565 Chaperone J-domain 101 203 7.72E-24
7 g6958.t3 SUPERFAMILY SSF158702 Sec63 N-terminal domain-like 244 445 2.43E-35
21 g6958.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
20 g6958.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 73 92 -
19 g6958.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 193 215 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031204 posttranslational protein targeting to membrane, translocation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed