Gene loci information

Transcript annotation

  • This transcript has been annotated as Translocation protein SEC63-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6958 g6958.t4 TSS g6958.t4 20177488 20177488
chr_2 g6958 g6958.t4 isoform g6958.t4 20177551 20179703
chr_2 g6958 g6958.t4 exon g6958.t4.exon1 20177551 20177674
chr_2 g6958 g6958.t4 cds g6958.t4.CDS1 20177551 20177674
chr_2 g6958 g6958.t4 exon g6958.t4.exon2 20177819 20179562
chr_2 g6958 g6958.t4 cds g6958.t4.CDS2 20177819 20179562
chr_2 g6958 g6958.t4 exon g6958.t4.exon3 20179619 20179703
chr_2 g6958 g6958.t4 cds g6958.t4.CDS3 20179619 20179703
chr_2 g6958 g6958.t4 TTS g6958.t4 20180419 20180419

Sequences

>g6958.t4 Gene=g6958 Length=1953
ATGGGACAAAAATTTCAATATGATGAAAGTGGGAGCACTTTCTTTTATTTCATCCTTTCA
TTCCTAGCATTGATTTTAATTCCCGCGACGTTTTATTTTTGGCCAACTCGAAAGAAATCA
GAAGATCCCAACAAAGCTAAAGAAGAATGTCAATGTGAAGGATGCTGTGAAAAGCGAGTA
ATAATAGCGAATATTGATCCATATAAAAATTTAAAATCTCTAGCTGTAAAAGCTTCACTA
GTTTTTGGATGGATGCTACTTATATTTCTAGCTTATAAAGTTTCTCAATTTGATTATGAA
ATGTCAAATTTTGATCCCTATGAAATTTTGGGTGTACCTATTGGTTCATCAAAAGCAGAA
GTAAAGAAAGCATATTTCAAACTTTCTACAATTTGGCATCCTGATAAAAATACTGGTGAT
GAAAAAGTTTTCGTAAAATTAACAAAAGCTTATAAAGCATTGACTGACGACGAGGCTCGT
AAAAATTGGGAAAAGTATGGCAATCCTGATGGTCCAGCAGCAATGTCATTTGGAATCGCA
TTACCTTCATGGATAGTTGAAAAAGAAAATTCTGTTTGGGTGCTTGGTCTTTATGCGCTT
GTATTTATGGTAGCATTACCAATTGCTGTTGGCACATGGTGGTATCGAAGTATTCGTTTT
AGTGGTGACAAAGTTCTTCTTGATACAACACAACTATATTTTTACTTTTTTCACAAAACT
CCGAATATGGCTTTAAAGCGCGTCATTATGATTCTGGCAGCATCATTAGAATTCGATAAG
CGTCACAATTCACAAGTCACAGAGCGACCAACAGATAATGAAGAAGTTCCGTCACTAATT
AAGCAACTGCCGCATTTAAATGAAAAATGCAAGGAACTTCCTCTTTGTCGTAACTATTCT
GTAAAAACTAGAGCACTTATTCACGCACATTTGAGTCGACTACCGTTAAACCCTAACACA
CTAGAAAAAGATAGACAATTTGTGTTAAGAAAATGCCCTTATTTAGTTCAAGAGATGGTT
TCTGTTGTCAATCAGCTCATTATGCTCGCATATGCTGGAAGAATATCAGCATCAAAATTG
CCACCAATTGAAACTATTGAAAATTGTATGAAACTCTCACCAATGCTTATTCAAGGTTTA
TGGGAATTCAAATCACCTTTACTGCAATTACCGCATTTAACTGAAGACAATTTGAAATAT
TTTGTTAACAAGAAGCGTTACATAAAAAGTCTTCAACAATTTGCAAAGCTTCCCGAGAGT
GAGAGTCGTAGTTTATTGCGTGATTTTACTGATGAGGAGTATTCAAATGTTATCAAAGTT
CTAAGTAAAATGCCTCTCATTGATTTTAGTATCAAAGTTGAAGTTGTTGATGATGAAAAT
AGTAATGTTGTGACAGCTGGAGCGATCGTTACTGTCACAGTGAATCTTGTTCGAAGAAAT
ATGAGTGATCTTTTTGGAGATTCTTCAGCTGCAGAAAAGCAGTCAATTAAAGAAAGTAAT
AATGATGGTGAAGATAATGGTAATGCTGCTGAAGGTGAACAAAAAGAAAATGTACAACCA
ACTACTGCAAAGAAACCAGTGTGGTTAAAAAAGAGTCATAAGAGTAAGTCCAAATCAAAA
ACTACAAAAGCGAAACCTGCTATTGGAGCGATGAAACAAACTACTGTGACTACAAACAAT
ATAAAAGAAAATAGTAATGTCTCAAAAGAGCATAATGTTAAGCAACCTATTAAAGATGAA
AATGATTCTGATGCTGATGAATCGAGTGCAGAAAGTGACAATGAAAATGCAGATCATGAA
GCTGATCGATCGACTGATGATGAGAGAAAAACTTCTTCTGTTGAAGATGATGATATGGAA
TGGGAAAAGTTTCAACAAAAACTAAATAAGCGTGAAAAATTAGAAGGAAGATCAAAAAAT
TCGCATAGTGTTCATTGTCCACTATATCCTGAA

>g6958.t4 Gene=g6958 Length=651
MGQKFQYDESGSTFFYFILSFLALILIPATFYFWPTRKKSEDPNKAKEECQCEGCCEKRV
IIANIDPYKNLKSLAVKASLVFGWMLLIFLAYKVSQFDYEMSNFDPYEILGVPIGSSKAE
VKKAYFKLSTIWHPDKNTGDEKVFVKLTKAYKALTDDEARKNWEKYGNPDGPAAMSFGIA
LPSWIVEKENSVWVLGLYALVFMVALPIAVGTWWYRSIRFSGDKVLLDTTQLYFYFFHKT
PNMALKRVIMILAASLEFDKRHNSQVTERPTDNEEVPSLIKQLPHLNEKCKELPLCRNYS
VKTRALIHAHLSRLPLNPNTLEKDRQFVLRKCPYLVQEMVSVVNQLIMLAYAGRISASKL
PPIETIENCMKLSPMLIQGLWEFKSPLLQLPHLTEDNLKYFVNKKRYIKSLQQFAKLPES
ESRSLLRDFTDEEYSNVIKVLSKMPLIDFSIKVEVVDDENSNVVTAGAIVTVTVNLVRRN
MSDLFGDSSAAEKQSIKESNNDGEDNGNAAEGEQKENVQPTTAKKPVWLKKSHKSKSKSK
TTKAKPAIGAMKQTTVTTNNIKENSNVSKEHNVKQPIKDENDSDADESSAESDNENADHE
ADRSTDDERKTSSVEDDDMEWEKFQQKLNKREKLEGRSKNSHSVHCPLYPE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g6958.t4 CDD cd06257 DnaJ 105 156 1.94896E-16
10 g6958.t4 Gene3D G3DSA:1.10.287.110 - 99 176 1.3E-19
9 g6958.t4 Gene3D G3DSA:1.10.3380.10 - 244 382 1.5E-12
24 g6958.t4 MobiDBLite mobidb-lite consensus disorder prediction 489 521 -
29 g6958.t4 MobiDBLite mobidb-lite consensus disorder prediction 489 651 -
27 g6958.t4 MobiDBLite mobidb-lite consensus disorder prediction 527 541 -
26 g6958.t4 MobiDBLite mobidb-lite consensus disorder prediction 551 566 -
25 g6958.t4 MobiDBLite mobidb-lite consensus disorder prediction 567 583 -
28 g6958.t4 MobiDBLite mobidb-lite consensus disorder prediction 592 640 -
3 g6958.t4 PANTHER PTHR24075 SEC63 DOMAIN-CONTAINING 3 651 8.6E-137
4 g6958.t4 PANTHER PTHR24075:SF0 TRANSLOCATION PROTEIN SEC63 HOMOLOG 3 651 8.6E-137
6 g6958.t4 PRINTS PR00625 DnaJ domain signature 107 125 3.5E-7
5 g6958.t4 PRINTS PR00625 DnaJ domain signature 125 140 3.5E-7
2 g6958.t4 Pfam PF00226 DnaJ domain 105 163 1.8E-16
1 g6958.t4 Pfam PF02889 Sec63 Brl domain 238 475 8.0E-12
13 g6958.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 13 -
16 g6958.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 14 34 -
11 g6958.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 35 73 -
15 g6958.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 74 92 -
14 g6958.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 93 191 -
17 g6958.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 192 215 -
12 g6958.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 216 651 -
30 g6958.t4 ProSiteProfiles PS50076 dnaJ domain profile. 105 167 17.71
22 g6958.t4 SMART SM00271 dnaj_3 104 159 1.3E-18
23 g6958.t4 SMART SM00973 Sec63_2 225 575 5.9E-4
8 g6958.t4 SUPERFAMILY SSF46565 Chaperone J-domain 101 203 1.31E-23
7 g6958.t4 SUPERFAMILY SSF158702 Sec63 N-terminal domain-like 244 445 4.45E-35
21 g6958.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -
20 g6958.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 73 92 -
19 g6958.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 193 215 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031204 posttranslational protein targeting to membrane, translocation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed