General information for g6958.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Translocation protein SEC63-like protein.
Parent gene
- The parent gene g6958 is located on chr_2: 20178568..20180178 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6958 | g6958.t6 | isoform | g6958.t6 | 20178568 | 20179561 |
| chr_2 | g6958 | g6958.t6 | exon | g6958.t6.exon1 | 20178568 | 20179561 |
| chr_2 | g6958 | g6958.t6 | cds | g6958.t6.CDS1 | 20178709 | 20179560 |
| chr_2 | g6958 | g6958.t6 | TTS | g6958.t6 | 20180419 | 20180419 |
| chr_2 | g6958 | g6958.t6 | TSS | g6958.t6 | NA | NA |
Sequences
>g6958.t6 Gene=g6958 Length=994
GAACTTCCTCTTTGTCGTAACTATTCTGTAAAAACTAGAGCACTTATTCACGCACATTTG
AGTCGACTACCGTTAAACCCTAACACACTAGAAAAAGATAGACAATTTGTGTTAAGAAAA
TGCCCTTATTTAGTTCAAGAGATGGTTTCTGTTGTCAATCAGCTCATTATGCTCGCATAT
GCTGGAAGAATATCAGCATCAAAATTGCCACCAATTGAAACTATTGAAAATTGTATGAAA
CTCTCACCAATGCTTATTCAAGGTTTATGGGAATTCAAATCACCTTTACTGCAATTACCG
CATTTAACTGAAGACAATTTGAAATATTTTGTTAACAAGAAGCGTTACATAAAAAGTCTT
CAACAATTTGCAAAGCTTCCCGAGAGTGAGAGTCGTAGTTTATTGCGTGATTTTACTGAT
GAGGAGTATTCAAATGTTATCAAAGTTCTAAGTAAAATGCCTCTCATTGATTTTAGTATC
AAAGTTGAAGTTGTTGATGATGAAAATAGTAATGTTGTGACAGCTGGAGCGATCGTTACT
GTCACAGTGAATCTTGTTCGAAGAAATATGAGTGATCTTTTTGGAGATTCTTCAGCTGCA
GAAAAGCAGTCAATTAAAGAAAGTAATAATGATGGTGAAGATAATGGTAATGCTGCTGAA
GGTGAACAAAAAGAAAATGTACAACCAACTACTGCAAAGAAACCAGTGTGGTTAAAAAAG
AGTCATAAGAGTAAGTCCAAATCAAAAACTACAAAAGCGAAACCTGCTATTGGAGCGATG
AAACAAACTACTGTGACTACAAACAATATAAAAGAAAATAGTAATGTCTCAAAAGAGCAT
AATGTTAAGCAACCTATTAAAGATGAAAATGATTCTGATGCTGATGAATCGAGTGCAGAA
AGTGACAATGAAAATGCAGATCATGAAGCTGATCGATCGACTGATGATGAGAGAAAAACT
TCTTCTGTTGAAGATGATGATATGGAATGGGAAA
>g6958.t6 Gene=g6958 Length=284
MVSVVNQLIMLAYAGRISASKLPPIETIENCMKLSPMLIQGLWEFKSPLLQLPHLTEDNL
KYFVNKKRYIKSLQQFAKLPESESRSLLRDFTDEEYSNVIKVLSKMPLIDFSIKVEVVDD
ENSNVVTAGAIVTVTVNLVRRNMSDLFGDSSAAEKQSIKESNNDGEDNGNAAEGEQKENV
QPTTAKKPVWLKKSHKSKSKSKTTKAKPAIGAMKQTTVTTNNIKENSNVSKEHNVKQPIK
DENDSDADESSAESDNENADHEADRSTDDERKTSSVEDDDMEWE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6958.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 183 | - |
| 7 | g6958.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 284 | - |
| 3 | g6958.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 203 | - |
| 6 | g6958.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 213 | 228 | - |
| 4 | g6958.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 245 | - |
| 8 | g6958.t6 | MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 278 | - |
| 1 | g6958.t6 | PANTHER | PTHR24075 | SEC63 DOMAIN-CONTAINING | 3 | 189 | 9.7E-24 |
| 2 | g6958.t6 | SUPERFAMILY | SSF158702 | Sec63 N-terminal domain-like | 2 | 107 | 8.89E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
