Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6959 g6959.t10 TSS g6959.t10 20180539 20180539
chr_2 g6959 g6959.t10 isoform g6959.t10 20180615 20182182
chr_2 g6959 g6959.t10 exon g6959.t10.exon1 20180615 20180665
chr_2 g6959 g6959.t10 exon g6959.t10.exon2 20180783 20180922
chr_2 g6959 g6959.t10 exon g6959.t10.exon3 20180982 20181177
chr_2 g6959 g6959.t10 exon g6959.t10.exon4 20181332 20182041
chr_2 g6959 g6959.t10 cds g6959.t10.CDS1 20181637 20182041
chr_2 g6959 g6959.t10 exon g6959.t10.exon5 20182099 20182182
chr_2 g6959 g6959.t10 cds g6959.t10.CDS2 20182099 20182182
chr_2 g6959 g6959.t10 TTS g6959.t10 20182284 20182284

Sequences

>g6959.t10 Gene=g6959 Length=1181
ATGGCAAGCAGCACAGCTATTTCGAAGGTCCCTTTATTCCGCACACTTGCTGCTCGCGGA
TATGCATCACAACCGGCTGTTGCAGCAGCAATCAAAACAAGAGAAATCCAAACGACAACT
CTACCGAATAAACTCATTGTAACATCTACTGAAACTGGAACTCCAATTTCTCGTGTATCA
ATCACTTTTCGTGCTGGTGCTCGCAATGAAACTTACGAGAATCAAGGTGTATCTCACTAC
ATGCGTATCGCTGCTGGTTTGACAACTAAACACGCCACTACCTTCGGAATCACTCGCAAT
GTTCAGCAAGTTGGTGGTAATTTGTTTGTGACATCAGATCGTGAAGCTACTACCTATGTA
ATTGAAGTAACACGCGATCATTTGGAGGTCTCGGTAACTCAATCTTCTGCCAAAAACACA
AAGTTGGAAAGATCTCGAGTGAAACTCTTCAAAACTTTTATCAAACAAATTTTACTGCAA
ACAATGCCTCCGTTTCGGGAATCAATATTGATCATAACACTCTCACTGGATTTGCACAAA
ATTTGCAACTTCCAACTGGAGAAGGTAAAATTAATCAAAGTAATTATCATGGAGGTGTTG
ATTTACGTTTGGAAAAAGGAGGTCGCAATGCAGCAGTTGCTGTTGCAACAAGTGGTGGAT
CATGGTCATCAATTCAGGAAGGAGTTGCTTTCATGGTTTTGCAGCAAGTTGCAGGTGTTA
CACCAAATGTTAAATATGGAAATAGTGCAGGAGTTATTTCAAAATCTATTCAATCTGCTG
CACCAAATACTGCAGTTTGTGCTCTCAATGCAGGTTACACAGATAGCGGTCTCTTTGGTT
TTGTTGTTAATGGACCAGCCAAGGAATCAGGAGCTGCTGTTGAAGCTGGAATTAAATCAT
TGAAATCAGCTACAATTACAGATGATGATATTGCTCGTGGCAAGGCTCAATTGAAATCTT
TAATTTCCTTTAATTATGAATCAGATCCAAACCTACTTATTGAACTTGGCCTTCAATCAA
TGATCTTTAAAGGAGTTTTGTCACTTAAAGACGCTCTTAGTGCTGTCGATGCCATTCAAG
CTTCAGATGTAAAGAATGTTGCCCGTAAATTATCAAATAAAGTGTCAATTGGCGCTGTTG
GTTATTTAGAGCATGTTCCATATGCTGCTGATTTCAATTAA

>g6959.t10 Gene=g6959 Length=162
MVLQQVAGVTPNVKYGNSAGVISKSIQSAAPNTAVCALNAGYTDSGLFGFVVNGPAKESG
AAVEAGIKSLKSATITDDDIARGKAQLKSLISFNYESDPNLLIELGLQSMIFKGVLSLKD
ALSAVDAIQASDVKNVARKLSNKVSIGAVGYLEHVPYAADFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g6959.t10 Gene3D G3DSA:3.30.830.10 Cytochrome Bc1 Complex; Chain A 1 161 0
1 g6959.t10 PANTHER PTHR11851 METALLOPROTEASE 2 158 0
2 g6959.t10 PANTHER PTHR11851:SF216 CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL 2 158 0
3 g6959.t10 SUPERFAMILY SSF63411 LuxS/MPP-like metallohydrolase 2 160 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0046872 metal ion binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed