Gene loci information

Transcript annotation

  • This transcript has been annotated as Nitric oxide synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6966 g6966.t1 isoform g6966.t1 20206001 20219116
chr_2 g6966 g6966.t1 exon g6966.t1.exon1 20206001 20206606
chr_2 g6966 g6966.t1 cds g6966.t1.CDS1 20206001 20206606
chr_2 g6966 g6966.t1 exon g6966.t1.exon2 20210375 20210511
chr_2 g6966 g6966.t1 cds g6966.t1.CDS2 20210375 20210511
chr_2 g6966 g6966.t1 exon g6966.t1.exon3 20211450 20211612
chr_2 g6966 g6966.t1 cds g6966.t1.CDS3 20211450 20211612
chr_2 g6966 g6966.t1 exon g6966.t1.exon4 20211799 20211890
chr_2 g6966 g6966.t1 cds g6966.t1.CDS4 20211799 20211890
chr_2 g6966 g6966.t1 exon g6966.t1.exon5 20212104 20212170
chr_2 g6966 g6966.t1 cds g6966.t1.CDS5 20212104 20212170
chr_2 g6966 g6966.t1 exon g6966.t1.exon6 20212230 20212304
chr_2 g6966 g6966.t1 cds g6966.t1.CDS6 20212230 20212304
chr_2 g6966 g6966.t1 exon g6966.t1.exon7 20212357 20212436
chr_2 g6966 g6966.t1 cds g6966.t1.CDS7 20212357 20212436
chr_2 g6966 g6966.t1 exon g6966.t1.exon8 20212495 20212554
chr_2 g6966 g6966.t1 cds g6966.t1.CDS8 20212495 20212554
chr_2 g6966 g6966.t1 exon g6966.t1.exon9 20212649 20212695
chr_2 g6966 g6966.t1 cds g6966.t1.CDS9 20212649 20212695
chr_2 g6966 g6966.t1 exon g6966.t1.exon10 20212801 20212878
chr_2 g6966 g6966.t1 cds g6966.t1.CDS10 20212801 20212878
chr_2 g6966 g6966.t1 exon g6966.t1.exon11 20212940 20212989
chr_2 g6966 g6966.t1 cds g6966.t1.CDS11 20212940 20212989
chr_2 g6966 g6966.t1 exon g6966.t1.exon12 20213124 20213341
chr_2 g6966 g6966.t1 cds g6966.t1.CDS12 20213124 20213341
chr_2 g6966 g6966.t1 exon g6966.t1.exon13 20213406 20213494
chr_2 g6966 g6966.t1 cds g6966.t1.CDS13 20213406 20213494
chr_2 g6966 g6966.t1 exon g6966.t1.exon14 20213586 20213670
chr_2 g6966 g6966.t1 cds g6966.t1.CDS14 20213586 20213670
chr_2 g6966 g6966.t1 exon g6966.t1.exon15 20214171 20214315
chr_2 g6966 g6966.t1 cds g6966.t1.CDS15 20214171 20214315
chr_2 g6966 g6966.t1 exon g6966.t1.exon16 20214411 20214580
chr_2 g6966 g6966.t1 cds g6966.t1.CDS16 20214411 20214580
chr_2 g6966 g6966.t1 exon g6966.t1.exon17 20214656 20214805
chr_2 g6966 g6966.t1 cds g6966.t1.CDS17 20214656 20214805
chr_2 g6966 g6966.t1 exon g6966.t1.exon18 20215041 20215458
chr_2 g6966 g6966.t1 cds g6966.t1.CDS18 20215041 20215458
chr_2 g6966 g6966.t1 exon g6966.t1.exon19 20215532 20215682
chr_2 g6966 g6966.t1 cds g6966.t1.CDS19 20215532 20215682
chr_2 g6966 g6966.t1 exon g6966.t1.exon20 20215796 20216176
chr_2 g6966 g6966.t1 cds g6966.t1.CDS20 20215796 20216176
chr_2 g6966 g6966.t1 exon g6966.t1.exon21 20216254 20216400
chr_2 g6966 g6966.t1 cds g6966.t1.CDS21 20216254 20216400
chr_2 g6966 g6966.t1 exon g6966.t1.exon22 20216476 20216687
chr_2 g6966 g6966.t1 cds g6966.t1.CDS22 20216476 20216687
chr_2 g6966 g6966.t1 exon g6966.t1.exon23 20216761 20216885
chr_2 g6966 g6966.t1 cds g6966.t1.CDS23 20216761 20216885
chr_2 g6966 g6966.t1 exon g6966.t1.exon24 20216950 20217016
chr_2 g6966 g6966.t1 cds g6966.t1.CDS24 20216950 20217016
chr_2 g6966 g6966.t1 exon g6966.t1.exon25 20217132 20217241
chr_2 g6966 g6966.t1 cds g6966.t1.CDS25 20217132 20217241
chr_2 g6966 g6966.t1 exon g6966.t1.exon26 20218347 20218433
chr_2 g6966 g6966.t1 cds g6966.t1.CDS26 20218347 20218433
chr_2 g6966 g6966.t1 exon g6966.t1.exon27 20218765 20218906
chr_2 g6966 g6966.t1 cds g6966.t1.CDS27 20218765 20218906
chr_2 g6966 g6966.t1 exon g6966.t1.exon28 20218973 20219116
chr_2 g6966 g6966.t1 cds g6966.t1.CDS28 20218973 20219116
chr_2 g6966 g6966.t1 TTS g6966.t1 20219235 20219235
chr_2 g6966 g6966.t1 TSS g6966.t1 NA NA

Sequences

>g6966.t1 Gene=g6966 Length=4296
ATGAATCAGCATATTAACTCAATGTTAGAACACTTTACATCCTTAAGACGAAAAAATTCG
GAAAGTGCACAAGCGTCATCTAATGATAAGCATAATGTGGCAATAGAACTTGACCAAAAG
GACATGAATGATGTTGAGACAATGAGTAGCAAGACTAGAAGTATATTTAAAGATCTCATA
AGTGATAACGGCGCCACAAACATTTTGAATTTCATAAAATGTACTAATACTAGTACCACA
AGTACCACATTGGTAAACTCTTCATCAAATGGAACATGTAAAAAGCAACAAAATAATAAT
CATGATGTTGACAATGAAGAAAACATCCACCAACAAACTAAGAATTTTCTTCATCCAATC
ACAAATGAAACTAACAATAGTATAGCAGTGGTATCTACAAATGGAACTTGTGATTTTAAT
GTAGTTCGTGAAATGTCTCCAACACCACAGCGAGCGCATCGAAAATCATCACACGATATT
CGTTTGTTGAGGAGCAATCAGAATGGCGAGAATCAGGGAAAATCGACAGCTGTAAGACCA
CTAAAAATGAAGAACATCATTACGGGAAATGAATCACTCGATACACTTAATCATCGTAGC
ATGGATGCACTTGGTTGTAGCTCACAAGTCTGCATGGGAAGTGTGATGTTTGGTAATGTC
ATGTCAACAGAAGCTAGAAAGCCTGCAGTCATTAGGGAGCACGCCATCGATTTCATCAGT
CAGTATTATACATCGATTAGGAGATTTAATTCACTAGCGCATCAAAATCGAACACAACAA
ATTGAGAAGGAAATTCAAGAGACTGGAGCATATCAATTAAGTGATTCTGAACTTATATTT
GGAGCTAAAACTGCATGGAGAAATTCTGCACGATGTATTGGAAGAATTCAATGGTCAAAG
CTACAAGTTTTTGATTGTCGTCATCTTCTTACACCGTCACAAATGTTTGAAGCATTATGT
AATCACATAAAATATAGCACAAATAAAGGAAATTTAAGGTCGGCAATCACGATTTTCCCT
CAGAGAGTTGCAAATAAACCAGATTTTCGTATATGGAATTCACAGTTAATTTCTTATGCT
GGATATATAAATTCTGATGGGACAATTACTGGTGATCCATTAAATGTGGAAATAACAGAT
GTCTGTTTAAAGCTTGGTTGGAAGAGTCCGAGAGGAGAATTTGACATTTTGCCATTAGTG
TTGTCAGCTAATGGAAATGATCCCGAAATGTTTGAATTTCCTCCTGGTTTGGTATTAGAA
GTACCGTTAACACATCCACAGTTCAGTTGGTTCGGTGAAATGAATCTCAAGTGGTATGCA
GTTCCTGCTGTTTCAAGTATGCTCTTCGATTGTGGAGGAATTATTTTTCCAAGTGTAGCA
TTCTCTGGCTGGTACATGTCAACTGAAATTGCATGCAGGGATTTGTGTGACTCAAATAGA
CGAAATTTAATTGAGCCAATCGCAATAAAAATGGGTCTCGATGTCCGAAATCCGAGCTCA
TTGTGGAAAGATAGAGCACTTGTGGAAATCAATATTGCAGTATTGCATTCATATCAATCG
CACAACATTACCATAGTTGATCATCATACAGCAAGTGAGAGCTTTATGAAACATTATGAA
AATGAGTGTAAAATAAGAGGAGGTTGTGCTGCAGATTGGATATGGATAGTTCCACCAATG
TCAGCTTCAATTTTGCAAGTCTTTCATCAAGAAATGGCTACATATTATCTCAGACCGTCA
TTTGAGTATCAAGAGCCAGCAATGAAGACACACGTATGGAACCGAGGACAAGACTCTTCT
AAAAATAAGTTGCCAAGAAGGAAATTTCATTTTAAACAGATTGCGAGAGCTGTAAAGTTT
ACAAGTAAACTGTTTGGTCGTGCGTTAAGCAGACGAATAAAGGCAACAGTTTTATACGCA
ACGGAAACAGGAAAATCGGAGCAATATGCAAAGCAACTTGTTGAATTGTTAAGCCATGCT
TTCAATGCTCAGATTTATGATATGGCGGACTATGATATTTCATCGATAGAACATGAAGCA
TTGCTACTAATTGTAGCATCAACTTTTGGAAATGGTGATCCGCCTGAAAATGGTGAGCAA
TTTGCTCAAGGATTGTATGCGATGAAACTTCATGATGCCGAGATGGAAGTTAACAATATG
AACATTGCGGCTTCATCGAAATCATTCATAAAAGTGAATTCTCGAACAGAAAGGAAGAAA
AGTCAGCCAAAAATCGATAGATTAGACTCATTGAGAGGCTCTTGTTCAGATTCACTGTTT
AATGAGACTTTTGGTCCATTATCCAATGTTAGATTTGCAGTCTTTGCTCTTGGCTCGTCA
GCATATCCTAACTTTTGCTCGTTTGGAAAGTTTGTCGATAATCTACTGGGTGAGTTAGGC
GGCGAGAGACTTATGAAAATTGTTCTCGGTGATGATCTGTGCGGTCAGGAGCACGAGTTT
CGTAAGTGGGCTTGTGATGTGTACAGAAAATCGTGCGAAGCTTTCTGTCTCGATTTGAAT
GATTTCTGCGAGATGTCTTTAAAAGGAGAAGCATTGACCAAAGAAAATACGCGTTTTCAA
GTAGTCAAGGATGCTAATATTCCGTTGAACGTGTTATTGAGTAAATATCACAATAAAAAG
GTTCATGCATGCAGAGCAAAGAGCAAGCCGATAAATTTGCATGACTTGACGGAGAAAAAT
ACAATTTTGTTAAAAATTACAATAGATGATTTGGTAAACTACGAGCCAGGTGATCACGTA
GGTGTATGTGCGATGAATCGTAAAGAGTATGTGGATGGAATTATGAAAAAACTTACTGGT
GTTAGCGATTTTGACGAACCTCTTCAATTGCAAGTTTTAAATGAGCAACACACAGCAAAC
GGTATAGTAAAAACGTGGGAAAATCATGAGAAAATTCCAGTATGTTCGCTTCGAACTTTG
TTGACACGCTTCCTCGATATAACAAGTCCTCCATCACGACAATTTCTCACATTCCTTTCC
GCTTATTGCGAAGACTTTAAGGATAAAGAAAAAATGAGAATTCTTGTTAATGATTCAGCC
AAATATGAAGACTGGCGTCACAATAAACTCCCGCATCTGTTGCAAGTTTTTGAAGAATTT
ACATCATGTACACCACCAGCATCTCTATTTATTGCCAACTTAATGGCACTTCAGCCACGT
TTCTATTCAATATCATCATCACAAAAGAAGCATCCGAATGAAGTTCACTTGACGGTGGCA
GTTGTCAAATATAAGGCAAATGATGGTAAAAATTCGGAACGATTTGGCGTGTGCTCAAAC
TACATGGAAAGTCTCGAGCAAAATGATGAAGTGCAAATTTTTATTCGAAGTGCTCCCGGC
TTTCATATGCCAAAGGACACTTCACATCCAATGTTATTGATCGGACCAGGCACAGGCATT
TCACCATTTCGAAGCTTTTGGCAAGAATTGAGTGAAATTAAATTGCGAAACTCGTCGTTT
AACGTTCCAAAAGTTTGGTTATTTTTCGGTTGCCGCACAAAATCTATGGATTTATATTGC
AATGACAAAGAAGAGATGTTAAAAAGTGGAATATTGAATAGAGTGTATTTGGCATTGTCA
CGCGAGCCAAATATTCCAAAAACTTATGTACAGAATCTCATTATGAAAGAGCATTATGAA
ATTTATGATTTAATAAAAAATCAAAATTGCCATGTTTACGTCTGTGGTGACGTTCAAATG
GCTGAGAATGTCTATCAAACATTAAGGAAAATTATTGCAACCACTGAGAGACAGACTGAA
ACAGTTGCCGACAAGTACATGTTACAGTTGAGGGACGAAAATCGTTATCATGAAGATATT
TTTGGTATAACACTGAGGACTGCAGAGATTCACAACAAATCACGTCAAACAGCAAAAATT
AAAATGGAATCAAGGAGTGCAAAACTTGTGCAGTTGAGCCATCGCTTTCAATATCCACTG
TGCTTTTTGTATCATCGTTATCGTGTAGAAATAATAAACAAAAAACTAAGCAAAATGAAA
GTAGTTTTGTGCCTGTTCGCCTGCCTATCAGTTGCTTTAGCATTTCCTCAAGAAGGTGCA
CAATTTGCCAATGAAGCTATCAAACAGGCTCAAACATCACATTTAATTCCACACGACGCT
ATCATTCAGAATGTTGAGAAGAGTGTTCCACTAGCCCAATACGAAAACATTCCTGCTGGT
CAACGCTTTGATTTATTCATGGTTTTGGGTGATCAAGTACCAAGAGAAGTCATTGCCAAC
CTTCAAGATCAAATTGCCAACATCAACCGTCGCTAA

>g6966.t1 Gene=g6966 Length=1431
MNQHINSMLEHFTSLRRKNSESAQASSNDKHNVAIELDQKDMNDVETMSSKTRSIFKDLI
SDNGATNILNFIKCTNTSTTSTTLVNSSSNGTCKKQQNNNHDVDNEENIHQQTKNFLHPI
TNETNNSIAVVSTNGTCDFNVVREMSPTPQRAHRKSSHDIRLLRSNQNGENQGKSTAVRP
LKMKNIITGNESLDTLNHRSMDALGCSSQVCMGSVMFGNVMSTEARKPAVIREHAIDFIS
QYYTSIRRFNSLAHQNRTQQIEKEIQETGAYQLSDSELIFGAKTAWRNSARCIGRIQWSK
LQVFDCRHLLTPSQMFEALCNHIKYSTNKGNLRSAITIFPQRVANKPDFRIWNSQLISYA
GYINSDGTITGDPLNVEITDVCLKLGWKSPRGEFDILPLVLSANGNDPEMFEFPPGLVLE
VPLTHPQFSWFGEMNLKWYAVPAVSSMLFDCGGIIFPSVAFSGWYMSTEIACRDLCDSNR
RNLIEPIAIKMGLDVRNPSSLWKDRALVEINIAVLHSYQSHNITIVDHHTASESFMKHYE
NECKIRGGCAADWIWIVPPMSASILQVFHQEMATYYLRPSFEYQEPAMKTHVWNRGQDSS
KNKLPRRKFHFKQIARAVKFTSKLFGRALSRRIKATVLYATETGKSEQYAKQLVELLSHA
FNAQIYDMADYDISSIEHEALLLIVASTFGNGDPPENGEQFAQGLYAMKLHDAEMEVNNM
NIAASSKSFIKVNSRTERKKSQPKIDRLDSLRGSCSDSLFNETFGPLSNVRFAVFALGSS
AYPNFCSFGKFVDNLLGELGGERLMKIVLGDDLCGQEHEFRKWACDVYRKSCEAFCLDLN
DFCEMSLKGEALTKENTRFQVVKDANIPLNVLLSKYHNKKVHACRAKSKPINLHDLTEKN
TILLKITIDDLVNYEPGDHVGVCAMNRKEYVDGIMKKLTGVSDFDEPLQLQVLNEQHTAN
GIVKTWENHEKIPVCSLRTLLTRFLDITSPPSRQFLTFLSAYCEDFKDKEKMRILVNDSA
KYEDWRHNKLPHLLQVFEEFTSCTPPASLFIANLMALQPRFYSISSSQKKHPNEVHLTVA
VVKYKANDGKNSERFGVCSNYMESLEQNDEVQIFIRSAPGFHMPKDTSHPMLLIGPGTGI
SPFRSFWQELSEIKLRNSSFNVPKVWLFFGCRTKSMDLYCNDKEEMLKSGILNRVYLALS
REPNIPKTYVQNLIMKEHYEIYDLIKNQNCHVYVCGDVQMAENVYQTLRKIIATTERQTE
TVADKYMLQLRDENRYHEDIFGITLRTAEIHNKSRQTAKIKMESRSAKLVQLSHRFQYPL
CFLYHRYRVEIINKKLSKMKVVLCLFACLSVALAFPQEGAQFANEAIKQAQTSHLIPHDA
IIQNVEKSVPLAQYENIPAGQRFDLFMVLGDQVPREVIANLQDQIANINRR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
31 g6966.t1 CDD cd00795 NOS_oxygenase_euk 180 588 0.0
29 g6966.t1 Coils Coil Coil 1238 1258 -
23 g6966.t1 Gene3D G3DSA:3.90.340.10 Nitric Oxide Synthase; Chain A 194 556 7.7E-174
22 g6966.t1 Gene3D G3DSA:3.90.440.10 Nitric Oxide Synthase;Heme Domain;Chain A domain 2 308 419 7.7E-174
27 g6966.t1 Gene3D G3DSA:3.90.1230.10 Nitric Oxide Synthase; Chain A 420 530 7.7E-174
25 g6966.t1 Gene3D G3DSA:3.40.50.360 - 622 842 8.7E-67
26 g6966.t1 Gene3D G3DSA:2.40.30.10 Translation factors 877 1116 1.7E-83
28 g6966.t1 Gene3D G3DSA:1.20.990.10 - 925 1058 1.7E-83
24 g6966.t1 Gene3D G3DSA:3.40.50.80 - 1122 1283 3.0E-46
5 g6966.t1 PANTHER PTHR19384 NITRIC OXIDE SYNTHASE-RELATED 335 1286 0.0
6 g6966.t1 PANTHER PTHR19384:SF76 NITRIC OXIDE SYNTHASE 335 1286 0.0
30 g6966.t1 PIRSF PIRSF000333 INOS 26 1308 0.0
17 g6966.t1 PRINTS PR00369 Flavodoxin signature 636 649 3.4E-20
14 g6966.t1 PRINTS PR00369 Flavodoxin signature 683 694 3.4E-20
16 g6966.t1 PRINTS PR00369 Flavodoxin signature 769 779 3.4E-20
15 g6966.t1 PRINTS PR00369 Flavodoxin signature 793 812 3.4E-20
10 g6966.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 914 924 9.2E-25
7 g6966.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1060 1067 9.2E-25
13 g6966.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1096 1105 9.2E-25
8 g6966.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1132 1151 9.2E-25
9 g6966.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1163 1172 9.2E-25
11 g6966.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1207 1223 9.2E-25
12 g6966.t1 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1231 1239 9.2E-25
3 g6966.t1 Pfam PF02898 Nitric oxide synthase, oxygenase domain 231 588 1.1E-171
1 g6966.t1 Pfam PF00258 Flavodoxin 637 823 1.5E-54
4 g6966.t1 Pfam PF00667 FAD binding domain 891 1101 1.1E-55
2 g6966.t1 Pfam PF00175 Oxidoreductase NAD-binding domain 1133 1244 6.3E-17
32 g6966.t1 ProSitePatterns PS60001 Nitric oxide synthase (NOS) signature. 291 298 -
34 g6966.t1 ProSiteProfiles PS50902 Flavodoxin-like domain profile. 635 828 28.749
33 g6966.t1 ProSiteProfiles PS51384 Ferredoxin reductase-type FAD binding domain profile. 874 1124 13.327
19 g6966.t1 SUPERFAMILY SSF56512 Nitric oxide (NO) synthase oxygenase domain 180 594 2.75E-185
20 g6966.t1 SUPERFAMILY SSF52218 Flavoproteins 632 840 9.22E-51
18 g6966.t1 SUPERFAMILY SSF63380 Riboflavin synthase domain-like 858 1118 9.87E-68
21 g6966.t1 SUPERFAMILY SSF52343 Ferredoxin reductase-like, C-terminal NADP-linked domain 1120 1282 9.43E-44

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0004517 nitric-oxide synthase activity MF
GO:0055114 NA NA
GO:0050661 NADP binding MF
GO:0010181 FMN binding MF
GO:0005516 calmodulin binding MF
GO:0006809 nitric oxide biosynthetic process BP
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values