Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable multidrug resistance-associated protein lethal(2)03659.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6968 g6968.t2 TSS g6968.t2 20222230 20222230
chr_2 g6968 g6968.t2 isoform g6968.t2 20222250 20223443
chr_2 g6968 g6968.t2 exon g6968.t2.exon1 20222250 20222432
chr_2 g6968 g6968.t2 exon g6968.t2.exon2 20222713 20223443
chr_2 g6968 g6968.t2 cds g6968.t2.CDS1 20222748 20223443
chr_2 g6968 g6968.t2 TTS g6968.t2 20224142 20224142

Sequences

>g6968.t2 Gene=g6968 Length=914
ATAAACAAAAACAGTGAATTTATAAATTTTACCAAAAAAAATTTTTTTTAATAAAATTTC
AATGTTTTAAAAACCTAATTATAATTTTTTACAGAATATTTTGTTAAATAACATTGAAGT
ACTTAATGAATTATAAAAGTTGATTTCATTATAAAATTTTATATTGAATTTCATAATATT
TTGTTAAAATTGAAGAATGAATCAAAATAATAAATGAAATGGAATCACTGAATTCTAAGA
AACAATTACCACCGAGCCCAAGAGAAAAAGCAAATTTAATTTCATACATAACATTTGCAT
GGGCTATTCCAATATTCTTAAAAGGCAGAAATCAAACAATTGGCGATGATGACTTATTTC
AACCGTTGAATGAGCAAAAAGCAAGTGGCTTAGCAAATAAAATAAAAGATTCGTGGAATA
AAGAAGAAGAAAAATGTAGGAAAGATAATAAGAAACCATGGCTTGTTAGCGTATTGAGAA
GAGTTTTTGGTTATGAAGTTCTTTTTCAAGGACTTTTCCTTCTTTTCATTGAATGTGGAT
TAAAAATTCTACCTCCAATTTTTCTTAATCAAATAATTAAATATCATGAAAATAAAGATA
AAGAAAGTGAAGCAGTTATGTATTGGAGTACTTTTGGCATCACTTTGTGTATTTTTTTCA
ATGTCATAATTATGCATGCCTTCAACTTGAGTAACTTAAATTTGGGACTTAAAATGAGAA
TTGCTGTTAGTACCTTGATTTATGATAAATGTTTACAATTATCAAAAAGTTCACTTGCAA
ATGTAAGCTTAGGAAAAATTGTAAATCTTTTGTCAAGTGATGTTGGAAGATTCGATTCAA
CAGCTTTTGGATTTCATTATTTATGGGTTGGTCCAATTCAAACAATTTTTGTTACATATT
TAATTTATAATGAG

>g6968.t2 Gene=g6968 Length=232
MESLNSKKQLPPSPREKANLISYITFAWAIPIFLKGRNQTIGDDDLFQPLNEQKASGLAN
KIKDSWNKEEEKCRKDNKKPWLVSVLRRVFGYEVLFQGLFLLFIECGLKILPPIFLNQII
KYHENKDKESEAVMYWSTFGITLCIFFNVIIMHAFNLSNLNLGLKMRIAVSTLIYDKCLQ
LSKSSLANVSLGKIVNLLSSDVGRFDSTAFGFHYLWVGPIQTIFVTYLIYNE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g6968.t2 Gene3D G3DSA:1.20.1560.10 - 86 231 4.3E-8
2 g6968.t2 PANTHER PTHR24223:SF360 MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659-LIKE PROTEIN-RELATED 7 232 2.3E-46
3 g6968.t2 PANTHER PTHR24223 ATP-BINDING CASSETTE SUB-FAMILY C 7 232 2.3E-46
1 g6968.t2 Pfam PF00664 ABC transporter transmembrane region 98 229 1.5E-12
12 g6968.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 19 -
17 g6968.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 20 36 -
14 g6968.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 37 88 -
15 g6968.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 89 111 -
11 g6968.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 112 131 -
16 g6968.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 132 155 -
13 g6968.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 156 210 -
18 g6968.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 211 230 -
10 g6968.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 231 232 -
9 g6968.t2 ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. 98 232 13.781
7 g6968.t2 SUPERFAMILY SSF90123 ABC transporter transmembrane region 76 229 1.02E-14
4 g6968.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 98 120 -
6 g6968.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 133 155 -
5 g6968.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 209 231 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055085 transmembrane transport BP
GO:0005524 ATP binding MF
GO:0042626 ATPase-coupled transmembrane transporter activity MF
GO:0016021 integral component of membrane CC

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values