General information for g6987.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Rho-related BTB domain-containing protein 1.
Parent gene
- The parent gene g6987 is located on chr_2: 20366194..20367535 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6987 | g6987.t1 | isoform | g6987.t1 | 20366194 | 20367535 |
| chr_2 | g6987 | g6987.t1 | exon | g6987.t1.exon1 | 20366194 | 20366254 |
| chr_2 | g6987 | g6987.t1 | cds | g6987.t1.CDS1 | 20366194 | 20366254 |
| chr_2 | g6987 | g6987.t1 | exon | g6987.t1.exon2 | 20366961 | 20367109 |
| chr_2 | g6987 | g6987.t1 | cds | g6987.t1.CDS2 | 20366961 | 20367109 |
| chr_2 | g6987 | g6987.t1 | exon | g6987.t1.exon3 | 20367164 | 20367535 |
| chr_2 | g6987 | g6987.t1 | cds | g6987.t1.CDS3 | 20367164 | 20367535 |
| chr_2 | g6987 | g6987.t1 | TSS | g6987.t1 | NA | NA |
| chr_2 | g6987 | g6987.t1 | TTS | g6987.t1 | NA | NA |
Sequences
>g6987.t1 Gene=g6987 Length=582
ATGTTTGCAGATATAACATTTGAGCTTGACGATGGAAAAATGAAAGCTCATAGGGCGATG
CTTGTGGCACGTTGTGAAGTGATGCGCGCAATGTTGAACGGTAATTTTGCAGAGTCACAT
GCACACATCATCTGTTTGCCAGGTGTCACGGAGTACACATTCCACAAGCTATTATGTTAT
TTATACACAGATGAAATTCCTTCAATATCAGCTGAAAAATGTCTCAATTTGTTAGAATTA
GCAAATCGTTTGGTGTTACCGAGGTTATTGAACCTCATTGAATGTCGTGTGATTGAAAAC
TTGACGCGAATATCACAAAGTGAAACAATTGAAGCCGTCGACTTATGTCTTAAACTTCTT
GAACCAGTAAAGTTACACAATGCCCATCAATTAGCTGAATGGTGTATGTCTTACTTGTGT
GTAAACTATAACAGCATATGCAGACATTTACCAAAATCATTGAAATTACTACATCAAGAG
AATCAAGAGTATCTTAGTGAAAATCGATGGCCACCAGTATGGTACCTTAAAGATTATGAC
CATTATGTGAAAGAACAAAAGATGGAAACACACCTTAAATAA
>g6987.t1 Gene=g6987 Length=193
MFADITFELDDGKMKAHRAMLVARCEVMRAMLNGNFAESHAHIICLPGVTEYTFHKLLCY
LYTDEIPSISAEKCLNLLELANRLVLPRLLNLIECRVIENLTRISQSETIEAVDLCLKLL
EPVKLHNAHQLAEWCMSYLCVNYNSICRHLPKSLKLLHQENQEYLSENRWPPVWYLKDYD
HYVKEQKMETHLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6987.t1 | CDD | cd18499 | BACK_RHOBTB | 112 | 188 | 0.000 |
| 6 | g6987.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 149 | 0.000 |
| 2 | g6987.t1 | PANTHER | PTHR24072:SF156 | RHO-RELATED BTB DOMAIN CONTAINING, ISOFORM B | 2 | 164 | 0.000 |
| 3 | g6987.t1 | PANTHER | PTHR24072 | RHO FAMILY GTPASE | 2 | 164 | 0.000 |
| 1 | g6987.t1 | Pfam | PF00651 | BTB/POZ domain | 2 | 95 | 0.000 |
| 7 | g6987.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 3 | 70 | 13.591 |
| 5 | g6987.t1 | SMART | SM00225 | BTB_4 | 3 | 101 | 0.000 |
| 4 | g6987.t1 | SUPERFAMILY | SSF54695 | POZ domain | 2 | 94 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
