General information for g7007.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7007 is located on chr_2: 20588347..20592436 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7007 | g7007.t11 | TSS | g7007.t11 | 20583292 | 20583292 |
| chr_2 | g7007 | g7007.t11 | isoform | g7007.t11 | 20583403 | 20585164 |
| chr_2 | g7007 | g7007.t11 | exon | g7007.t11.exon1 | 20583403 | 20583460 |
| chr_2 | g7007 | g7007.t11 | cds | g7007.t11.CDS1 | 20583403 | 20583460 |
| chr_2 | g7007 | g7007.t11 | exon | g7007.t11.exon2 | 20583963 | 20584157 |
| chr_2 | g7007 | g7007.t11 | cds | g7007.t11.CDS2 | 20583963 | 20584157 |
| chr_2 | g7007 | g7007.t11 | exon | g7007.t11.exon3 | 20584215 | 20584669 |
| chr_2 | g7007 | g7007.t11 | cds | g7007.t11.CDS3 | 20584215 | 20584669 |
| chr_2 | g7007 | g7007.t11 | exon | g7007.t11.exon4 | 20584786 | 20584929 |
| chr_2 | g7007 | g7007.t11 | cds | g7007.t11.CDS4 | 20584786 | 20584929 |
| chr_2 | g7007 | g7007.t11 | exon | g7007.t11.exon5 | 20584993 | 20585164 |
| chr_2 | g7007 | g7007.t11 | cds | g7007.t11.CDS5 | 20584993 | 20585163 |
| chr_2 | g7007 | g7007.t11 | TTS | g7007.t11 | 20585135 | 20585135 |
Sequences
>g7007.t11 Gene=g7007 Length=1024
ATGTCGGGAGACGTACAAACACGACAAAGGCGAAAGGAGAAGAAAAAACCAAAACGCGAG
GAAGAAATTTCAACAGTTCCTGGAGTTGACACATCAAAATTCAATGAAGCCGAAAAAAAG
ACTGTGCAAATGCACATTCAAGAAAGTGATCATGGTGCAGGCATTTGCGCAAAGATCATT
TTTTTCTCTTTAATGGCAATTTTATTGGGACTTGTGACTCTTATTGTTCTTGAAAATCGC
GGCGGATCTGATGTTGATACACCATTATCAGAATCTCGGTTCTCTGAATATTTAACAGGA
TGGGTAGATGAGAATAGAGAAATAGATGATCATCATGTTGAACCGCATTTTGATATACAT
GATGATGATCCCGACGAAGAGACAACACATGTTTATCAGAAACCGGTTGTACCTGATGAT
GAACCGTTTCCAGAAGAAAGAGATAATTCAAATCCAGATGATGATCATGAAGAATTGAAT
GAAAATTTAAATAATGAATCTGAAAATGATGAAGATGATGTCATATCAGAAAATCAAAAT
GAAATAGATCAACAAGACGAAGAACAAGATGAAGATAACAATGAAAATGAAGTAAATGAT
GAACCATTAAGACAAGAAGAAGAAGAAAATAACGAGAACGAAGCAGCTGATGATGATGAA
AATGAAGTGCCAAATATGTTTGATGACAGTGCACCATTTGATGAGGAGAAAAGTCAAGTG
CGTATAAAAAGAGAGCATCTTGTAAAACAGGTAGATGAATTATATGACACTTACAATGAA
ATTGCTGAAATGCTTGGAAAAAATAAAGCAGCTACTAACAATAATCATATATTAAGTCAA
GAGTTCATAAAGGATGATGATGATGAAGACAATTTAAATAGTCAAGAAATTTTTGAAAAA
GTAATCGATAATGATGCTGGAGAAGACTTATTATTGCAAAAATTGGCAGAAGAAAGTGAA
AATGCTCAACAGCAGCAATCACAAGAAAATGATGGAGAAGAAAAAGAAGAAGAATCATCA
TCAC
>g7007.t11 Gene=g7007 Length=341
MSGDVQTRQRRKEKKKPKREEEISTVPGVDTSKFNEAEKKTVQMHIQESDHGAGICAKII
FFSLMAILLGLVTLIVLENRGGSDVDTPLSESRFSEYLTGWVDENREIDDHHVEPHFDIH
DDDPDEETTHVYQKPVVPDDEPFPEERDNSNPDDDHEELNENLNNESENDEDDVISENQN
EIDQQDEEQDEDNNENEVNDEPLRQEEEENNENEAADDDENEVPNMFDDSAPFDEEKSQV
RIKREHLVKQVDELYDTYNEIAEMLGKNKAATNNNHILSQEFIKDDDDEDNLNSQEIFEK
VIDNDAGEDLLLQKLAEESENAQQQQSQENDGEEKEEESSS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g7007.t11 | Coils | Coil | Coil | 153 | 195 | - |
| 11 | g7007.t11 | Coils | Coil | Coil | 315 | 336 | - |
| 5 | g7007.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 9 | g7007.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 7 | g7007.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 239 | - |
| 8 | g7007.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 158 | - |
| 6 | g7007.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 225 | - |
| 4 | g7007.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 341 | - |
| 1 | g7007.t11 | PANTHER | PTHR12366 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE | 1 | 338 | 3.8E-15 |
| 2 | g7007.t11 | PANTHER | PTHR12366:SF29 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE | 1 | 338 | 3.8E-15 |
| 12 | g7007.t11 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 54 | - |
| 14 | g7007.t11 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 55 | 77 | - |
| 13 | g7007.t11 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 78 | 341 | - |
| 3 | g7007.t11 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 54 | 76 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042264 | peptidyl-aspartic acid hydroxylation | BP |
| GO:0004597 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
