Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7007 g7007.t6 TSS g7007.t6 20583292 20583292
chr_2 g7007 g7007.t6 isoform g7007.t6 20583403 20584667
chr_2 g7007 g7007.t6 exon g7007.t6.exon1 20583403 20583460
chr_2 g7007 g7007.t6 exon g7007.t6.exon2 20583756 20583800
chr_2 g7007 g7007.t6 exon g7007.t6.exon3 20583965 20584157
chr_2 g7007 g7007.t6 cds g7007.t6.CDS1 20584034 20584157
chr_2 g7007 g7007.t6 exon g7007.t6.exon4 20584215 20584667
chr_2 g7007 g7007.t6 cds g7007.t6.CDS2 20584215 20584666
chr_2 g7007 g7007.t6 TTS g7007.t6 20585135 20585135

Sequences

>g7007.t6 Gene=g7007 Length=749
ATGTCGGGAGACGTACAAACACGACAAAGGCGAAAGGAGAAGAAAAAACCAAAACGCGAT
AGCGTTGATCAACATTCAATTTTTAAGCGATCAAGCTTTGAAGGAAGAAATTTCAACAGT
TCCTGGAGTTGACACATCAAAATTCAATGAAGCCGAAAAAAAGACTGTGCAAATGCACAT
TCAAGAAAGTGATCATGGTGCAGGCATTTGCGCAAAGATCATTTTTTTCTCTTTAATGGC
AATTTTATTGGGACTTGTGACTCTTATTGTTCTTGAAAATCGCGGCGGATCTGATGTTGA
TACACCATTATCAGAATCTCGGTTCTCTGAATATTTAACAGGATGGGTAGATGAGAATAG
AGAAATAGATGATCATCATGTTGAACCGCATTTTGATATACATGATGATGATCCCGACGA
AGAGACAACACATGTTTATCAGAAACCGGTTGTACCTGATGATGAACCGTTTCCAGAAGA
AAGAGATAATTCAAATCCAGATGATGATCATGAAGAATTGAATGAAAATTTAAATAATGA
ATCTGAAAATGATGAAGATGATGTCATATCAGAAAATCAAAATGAAATAGATCAACAAGA
CGAAGAACAAGATGAAGATAACAATGAAAATGAAGTAAATGATGAACCATTAAGACAAGA
AGAAGAAGAAAATAACGAGAACGAAGCAGCTGATGATGATGAAAATGAAGTGCCAAATAT
GTTTGATGACAGTGCACCATTTGATGAGG

>g7007.t6 Gene=g7007 Length=192
MHIQESDHGAGICAKIIFFSLMAILLGLVTLIVLENRGGSDVDTPLSESRFSEYLTGWVD
ENREIDDHHVEPHFDIHDDDPDEETTHVYQKPVVPDDEPFPEERDNSNPDDDHEELNENL
NNESENDEDDVISENQNEIDQQDEEQDEDNNENEVNDEPLRQEEEENNENEAADDDENEV
PNMFDDSAPFDE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g7007.t6 Coils Coil Coil 110 152 -
4 g7007.t6 MobiDBLite mobidb-lite consensus disorder prediction 92 192 -
5 g7007.t6 MobiDBLite mobidb-lite consensus disorder prediction 92 115 -
6 g7007.t6 MobiDBLite mobidb-lite consensus disorder prediction 116 182 -
1 g7007.t6 PANTHER PTHR12366 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE 6 179 2.7E-16
2 g7007.t6 PANTHER PTHR12366:SF29 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE 6 179 2.7E-16
8 g7007.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 11 -
10 g7007.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -
9 g7007.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 35 192 -
3 g7007.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 12 34 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042264 peptidyl-aspartic acid hydroxylation BP
GO:0004597 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed