Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7007 g7007.t7 TSS g7007.t7 20583292 20583292
chr_2 g7007 g7007.t7 isoform g7007.t7 20583403 20584667
chr_2 g7007 g7007.t7 exon g7007.t7.exon1 20583403 20583460
chr_2 g7007 g7007.t7 cds g7007.t7.CDS1 20583403 20583460
chr_2 g7007 g7007.t7 exon g7007.t7.exon2 20583963 20584157
chr_2 g7007 g7007.t7 cds g7007.t7.CDS2 20583963 20584157
chr_2 g7007 g7007.t7 exon g7007.t7.exon3 20584215 20584667
chr_2 g7007 g7007.t7 cds g7007.t7.CDS3 20584215 20584666
chr_2 g7007 g7007.t7 TTS g7007.t7 20585135 20585135

Sequences

>g7007.t7 Gene=g7007 Length=706
ATGTCGGGAGACGTACAAACACGACAAAGGCGAAAGGAGAAGAAAAAACCAAAACGCGAG
GAAGAAATTTCAACAGTTCCTGGAGTTGACACATCAAAATTCAATGAAGCCGAAAAAAAG
ACTGTGCAAATGCACATTCAAGAAAGTGATCATGGTGCAGGCATTTGCGCAAAGATCATT
TTTTTCTCTTTAATGGCAATTTTATTGGGACTTGTGACTCTTATTGTTCTTGAAAATCGC
GGCGGATCTGATGTTGATACACCATTATCAGAATCTCGGTTCTCTGAATATTTAACAGGA
TGGGTAGATGAGAATAGAGAAATAGATGATCATCATGTTGAACCGCATTTTGATATACAT
GATGATGATCCCGACGAAGAGACAACACATGTTTATCAGAAACCGGTTGTACCTGATGAT
GAACCGTTTCCAGAAGAAAGAGATAATTCAAATCCAGATGATGATCATGAAGAATTGAAT
GAAAATTTAAATAATGAATCTGAAAATGATGAAGATGATGTCATATCAGAAAATCAAAAT
GAAATAGATCAACAAGACGAAGAACAAGATGAAGATAACAATGAAAATGAAGTAAATGAT
GAACCATTAAGACAAGAAGAAGAAGAAAATAACGAGAACGAAGCAGCTGATGATGATGAA
AATGAAGTGCCAAATATGTTTGATGACAGTGCACCATTTGATGAGG

>g7007.t7 Gene=g7007 Length=235
MSGDVQTRQRRKEKKKPKREEEISTVPGVDTSKFNEAEKKTVQMHIQESDHGAGICAKII
FFSLMAILLGLVTLIVLENRGGSDVDTPLSESRFSEYLTGWVDENREIDDHHVEPHFDIH
DDDPDEETTHVYQKPVVPDDEPFPEERDNSNPDDDHEELNENLNNESENDEDDVISENQN
EIDQQDEEQDEDNNENEVNDEPLRQEEEENNENEAADDDENEVPNMFDDSAPFDE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g7007.t7 Coils Coil Coil 153 195 -
4 g7007.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 30 -
6 g7007.t7 MobiDBLite mobidb-lite consensus disorder prediction 1 26 -
5 g7007.t7 MobiDBLite mobidb-lite consensus disorder prediction 135 235 -
8 g7007.t7 MobiDBLite mobidb-lite consensus disorder prediction 135 158 -
7 g7007.t7 MobiDBLite mobidb-lite consensus disorder prediction 159 225 -
1 g7007.t7 PANTHER PTHR12366 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE 1 222 2.3E-18
2 g7007.t7 PANTHER PTHR12366:SF29 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE 1 222 2.3E-18
10 g7007.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 54 -
12 g7007.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 55 77 -
11 g7007.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 78 235 -
3 g7007.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 54 76 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0042264 peptidyl-aspartic acid hydroxylation BP
GO:0004597 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed