General information for g7011.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7011 is located on chr_2: 20628085..20628282 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7011 | g7011.t4 | isoform | g7011.t4 | 20627202 | 20627786 |
| chr_2 | g7011 | g7011.t4 | exon | g7011.t4.exon1 | 20627202 | 20627786 |
| chr_2 | g7011 | g7011.t4 | cds | g7011.t4.CDS1 | 20627202 | 20627660 |
| chr_2 | g7011 | g7011.t4 | TSS | g7011.t4 | 20628359 | 20628359 |
| chr_2 | g7011 | g7011.t4 | TTS | g7011.t4 | NA | NA |
Sequences
>g7011.t4 Gene=g7011 Length=585
GATTTTGAAAAGAACTATTATTATACTGGAATTAGTACAACATTAGCATGCAGCGAAAAA
ATTCCATCAGAACTTGTTAGTCAAATTAAAGCTTCGTTTAATAAAGATTTCGCGTCTACA
CAAGAAATGTTTTATGCCTATTATACTCAAAAGTTTCTTGATCCAGCAGTTGTGAAAGAA
GACGCAACAAAAGAAACATTGGCTAAAAAATTACTGGTTTTATTGAAAAAAGACGATTCT
TTACAATCACTTGGTTATGGCTTTTATATTGCTGGAAACTTAGGACCAACTGCAAGCTCG
GTTGCTGATCGTGTTGAAGATGCAATTGCTCAAGCTGATGAAGTTGATGGAAAATTGCTT
CAATTTGAGGGTGGATTAAGTATTACTTCTTTGATCATAAATGGAGCATTAAGAGTTACA
TCATTCAATAACAAACCAGCACCATTAACTGTTGAGCAAGCTAAAAAATTCACTTCATAT
TTCCTTTCAAGAAAATCGGTTACTCAAGCAAAAGGAGCTAGTTTGCTTTTGGAGTCTCTT
CGTTATATTATTAATGAAAAGAAAATTTCACCAGCTGCTATTCGA
>g7011.t4 Gene=g7011 Length=153
MFYAYYTQKFLDPAVVKEDATKETLAKKLLVLLKKDDSLQSLGYGFYIAGNLGPTASSVA
DRVEDAIAQADEVDGKLLQFEGGLSITSLIINGALRVTSFNNKPAPLTVEQAKKFTSYFL
SRKSVTQAKGASLLLESLRYIINEKKISPAAIR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7011.t4 | PANTHER | PTHR12640:SF0 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 | 30 | 144 | 0 |
| 3 | g7011.t4 | PANTHER | PTHR12640 | RIBOPHORIN II | 30 | 144 | 0 |
| 1 | g7011.t4 | Pfam | PF05817 | Oligosaccharyltransferase subunit Ribophorin II | 17 | 152 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008250 | oligosaccharyltransferase complex | CC |
| GO:0016021 | integral component of membrane | CC |
| GO:0006487 | protein N-linked glycosylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
