Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7011 g7011.t5 isoform g7011.t5 20627202 20628282
chr_2 g7011 g7011.t5 exon g7011.t5.exon1 20627202 20627786
chr_2 g7011 g7011.t5 cds g7011.t5.CDS1 20627202 20627660
chr_2 g7011 g7011.t5 exon g7011.t5.exon2 20627850 20628085
chr_2 g7011 g7011.t5 exon g7011.t5.exon3 20628199 20628282
chr_2 g7011 g7011.t5 TSS g7011.t5 20628359 20628359
chr_2 g7011 g7011.t5 TTS g7011.t5 NA NA

Sequences

>g7011.t5 Gene=g7011 Length=905
ATGAAGCGTTTAAGTGAGTATTAGTGTCCAATTTAGACGGAAAATAAATTTTCGATAACA
GAAATATGATGGTTTCTTAAAAAACATTAATATCCACTTTACTAGTCTTTGTGACTTGTG
TTTATGCCACGCGAACTGTTGATAACTTTTTGAGCAAATCAGATTTACAAAGACTGAATC
AAATTTTTGCTGATGGACTTCAATCTAGCGATCTACAAACACTTTATTATTCGGTCATTA
ATTCTAAGAATGTTCCTGCTGATATAAAATCAAATTTGTGCAAGAAACTCTCAGCTTTAC
ATTCTGAATCAAAATTAAATGATTTTGAAAAGAACTATTATTATACTGGAATTAGTACAA
CATTAGCATGCAGCGAAAAAATTCCATCAGAACTTGTTAGTCAAATTAAAGCTTCGTTTA
ATAAAGATTTCGCGTCTACACAAGAAATGTTTTATGCCTATTATACTCAAAAGTTTCTTG
ATCCAGCAGTTGTGAAAGAAGACGCAACAAAAGAAACATTGGCTAAAAAATTACTGGTTT
TATTGAAAAAAGACGATTCTTTACAATCACTTGGTTATGGCTTTTATATTGCTGGAAACT
TAGGACCAACTGCAAGCTCGGTTGCTGATCGTGTTGAAGATGCAATTGCTCAAGCTGATG
AAGTTGATGGAAAATTGCTTCAATTTGAGGGTGGATTAAGTATTACTTCTTTGATCATAA
ATGGAGCATTAAGAGTTACATCATTCAATAACAAACCAGCACCATTAACTGTTGAGCAAG
CTAAAAAATTCACTTCATATTTCCTTTCAAGAAAATCGGTTACTCAAGCAAAAGGAGCTA
GTTTGCTTTTGGAGTCTCTTCGTTATATTATTAATGAAAAGAAAATTTCACCAGCTGCTA
TTCGA

>g7011.t5 Gene=g7011 Length=153
MFYAYYTQKFLDPAVVKEDATKETLAKKLLVLLKKDDSLQSLGYGFYIAGNLGPTASSVA
DRVEDAIAQADEVDGKLLQFEGGLSITSLIINGALRVTSFNNKPAPLTVEQAKKFTSYFL
SRKSVTQAKGASLLLESLRYIINEKKISPAAIR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7011.t5 PANTHER PTHR12640:SF0 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 30 144 0
3 g7011.t5 PANTHER PTHR12640 RIBOPHORIN II 30 144 0
1 g7011.t5 Pfam PF05817 Oligosaccharyltransferase subunit Ribophorin II 17 152 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008250 oligosaccharyltransferase complex CC
GO:0016021 integral component of membrane CC
GO:0006487 protein N-linked glycosylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed