Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7011 g7011.t7 isoform g7011.t7 20627202 20628282
chr_2 g7011 g7011.t7 exon g7011.t7.exon1 20627202 20627786
chr_2 g7011 g7011.t7 cds g7011.t7.CDS1 20627202 20627786
chr_2 g7011 g7011.t7 exon g7011.t7.exon2 20627850 20628282
chr_2 g7011 g7011.t7 cds g7011.t7.CDS2 20627850 20628185
chr_2 g7011 g7011.t7 TSS g7011.t7 20628359 20628359
chr_2 g7011 g7011.t7 TTS g7011.t7 NA NA

Sequences

>g7011.t7 Gene=g7011 Length=1018
ATGAAGCGTTTAAGTGAGTATTAGTGTCCAATTTAGACGGAAAATAAATTTTCGATAACA
GAAATATGATGGTTTCTTAAAAAAGTAACTTTTTTGAATGCCGGCAGTGCCTCATTTTTG
TTTATTAAAAAATATATCAAATATTATTTTAATAATTTTAAATTTTCTATTAAATACTCT
AAATTATATATTTTCAGCATTAATATCCACTTTACTAGTCTTTGTGACTTGTGTTTATGC
CACGCGAACTGTTGATAACTTTTTGAGCAAATCAGATTTACAAAGACTGAATCAAATTTT
TGCTGATGGACTTCAATCTAGCGATCTACAAACACTTTATTATTCGGTCATTAATTCTAA
GAATGTTCCTGCTGATATAAAATCAAATTTGTGCAAGAAACTCTCAGCTTTACATTCTGA
ATCAAAATTAAATGATTTTGAAAAGAACTATTATTATACTGGAATTAGTACAACATTAGC
ATGCAGCGAAAAAATTCCATCAGAACTTGTTAGTCAAATTAAAGCTTCGTTTAATAAAGA
TTTCGCGTCTACACAAGAAATGTTTTATGCCTATTATACTCAAAAGTTTCTTGATCCAGC
AGTTGTGAAAGAAGACGCAACAAAAGAAACATTGGCTAAAAAATTACTGGTTTTATTGAA
AAAAGACGATTCTTTACAATCACTTGGTTATGGCTTTTATATTGCTGGAAACTTAGGACC
AACTGCAAGCTCGGTTGCTGATCGTGTTGAAGATGCAATTGCTCAAGCTGATGAAGTTGA
TGGAAAATTGCTTCAATTTGAGGGTGGATTAAGTATTACTTCTTTGATCATAAATGGAGC
ATTAAGAGTTACATCATTCAATAACAAACCAGCACCATTAACTGTTGAGCAAGCTAAAAA
ATTCACTTCATATTTCCTTTCAAGAAAATCGGTTACTCAAGCAAAAGGAGCTAGTTTGCT
TTTGGAGTCTCTTCGTTATATTATTAATGAAAAGAAAATTTCACCAGCTGCTATTCGA

>g7011.t7 Gene=g7011 Length=307
MPAVPHFCLLKNISNIILIILNFLLNTLNYIFSALISTLLVFVTCVYATRTVDNFLSKSD
LQRLNQIFADGLQSSDLQTLYYSVINSKNVPADIKSNLCKKLSALHSESKLNDFEKNYYY
TGISTTLACSEKIPSELVSQIKASFNKDFASTQEMFYAYYTQKFLDPAVVKEDATKETLA
KKLLVLLKKDDSLQSLGYGFYIAGNLGPTASSVADRVEDAIAQADEVDGKLLQFEGGLSI
TSLIINGALRVTSFNNKPAPLTVEQAKKFTSYFLSRKSVTQAKGASLLLESLRYIINEKK
ISPAAIR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g7011.t7 PANTHER PTHR12640:SF0 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE–PROTEIN GLYCOSYLTRANSFERASE SUBUNIT 2 40 298 3.3E-27
3 g7011.t7 PANTHER PTHR12640 RIBOPHORIN II 40 298 3.3E-27
1 g7011.t7 Pfam PF05817 Oligosaccharyltransferase subunit Ribophorin II 38 306 1.4E-58
5 g7011.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 6 -
8 g7011.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 7 25 -
7 g7011.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 26 30 -
9 g7011.t7 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 31 49 -
6 g7011.t7 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 50 307 -
4 g7011.t7 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 13 35 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008250 oligosaccharyltransferase complex CC
GO:0016021 integral component of membrane CC
GO:0006487 protein N-linked glycosylation BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values