General information for g7019.t37
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Mitochondrial inner membrane protein OXA1L.
Parent gene
- The parent gene g7019 is located on chr_2: 20671777..20672514 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7019 | g7019.t37 | TTS | g7019.t37 | 20671116 | 20671116 |
| chr_2 | g7019 | g7019.t37 | isoform | g7019.t37 | 20671777 | 20672514 |
| chr_2 | g7019 | g7019.t37 | exon | g7019.t37.exon1 | 20671777 | 20672514 |
| chr_2 | g7019 | g7019.t37 | cds | g7019.t37.CDS1 | 20671779 | 20672075 |
| chr_2 | g7019 | g7019.t37 | TSS | g7019.t37 | 20672585 | 20672585 |
Sequences
>g7019.t37 Gene=g7019 Length=738
ATGTTGAGGTGTGGAAACTTATTTAAAACACTTCAATATGGTTCACGAAGTTCCGTTATT
GTACGGGTAATTAATGTAAAATTGTATTTCGCATAAAATTTTAAAAATAATAATCGTCAC
ATTTCAGAACCAAAATTTTGTAAGAAATTTCAGTCAAATTCATAAAACAACACCAATAGT
TTTGCTTGAAAACAAAAAAATCGAGATAAATTATAACAAAGTTCGTTTTGCTAGTTCTCA
AACTTCATCATTAGAAAATATTCCTGAACCACCAGCGATTCCAGAAAAAATTATTGAAAC
AACAACATCAGCACAACCTCAGGATATTGTGGAAAAAGTAATTGAATCAACTCAAGCAGT
AGCAGTTGAAGGAGTAGAACCTGCATTTACCTCTATCGGTTTAGGTGGTTATTCACCAGT
TGGAATAGTTCAACATTGTATGGAATTTCTTCACATTACTTGTGATTTGCCTTGGTGGGG
TGCTATTCTTGTTGGTACAATATGTGTGCGAGCTTTAATATTTCCTTTAGTCATTATCGC
ACAAAGAAACGGAGCCAAGTTAGCCAACAATATGCCTCAAATGCAAGTTCTTCAAGCAAA
AATGACTGAGGCGAGACAATCTGGGAATGCTATAGAAGCCGCTCGCTATTCACAAGCCTT
AGTTGAGTTCATGAAAGAGAAAAAAGTCAATCCATTAAAAAATATGGTCGTACCTTTGGC
TCAAGCTCCGCTTTTTAT
>g7019.t37 Gene=g7019 Length=99
MEFLHITCDLPWWGAILVGTICVRALIFPLVIIAQRNGAKLANNMPQMQVLQAKMTEARQ
SGNAIEAARYSQALVEFMKEKKVNPLKNMVVPLAQAPLF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g7019.t37 | PANTHER | PTHR12428 | OXA1 | 2 | 99 | 1.5E-33 |
| 3 | g7019.t37 | PANTHER | PTHR12428:SF34 | MITOCHONDRIAL INNER MEMBRANE PROTEIN OXA1L | 2 | 99 | 1.5E-33 |
| 1 | g7019.t37 | Pfam | PF02096 | 60Kd inner membrane protein | 12 | 99 | 3.2E-11 |
| 6 | g7019.t37 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 11 | - |
| 7 | g7019.t37 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 12 | 34 | - |
| 5 | g7019.t37 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 35 | 99 | - |
| 4 | g7019.t37 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 10 | 32 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0032977 | membrane insertase activity | MF |
| GO:0016021 | integral component of membrane | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
