General information for g7039.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Collagen alpha-1(I) chain.
Parent gene
- The parent gene g7039 is located on chr_2: 20767624..20778165 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7039 | g7039.t1 | isoform | g7039.t1 | 20767624 | 20778165 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon1 | 20767624 | 20767668 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS1 | 20767624 | 20767668 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon2 | 20767734 | 20767768 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS2 | 20767734 | 20767768 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon3 | 20767832 | 20767868 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS3 | 20767832 | 20767868 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon4 | 20767999 | 20768051 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS4 | 20767999 | 20768051 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon5 | 20768116 | 20768142 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS5 | 20768116 | 20768142 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon6 | 20768202 | 20768228 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS6 | 20768202 | 20768228 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon7 | 20768297 | 20768360 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS7 | 20768297 | 20768360 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon8 | 20768419 | 20768494 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS8 | 20768419 | 20768494 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon9 | 20768561 | 20768601 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS9 | 20768561 | 20768601 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon10 | 20768661 | 20768687 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS10 | 20768661 | 20768687 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon11 | 20768750 | 20768790 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS11 | 20768750 | 20768790 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon12 | 20768848 | 20768868 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS12 | 20768848 | 20768868 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon13 | 20768932 | 20768967 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS13 | 20768932 | 20768967 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon14 | 20769036 | 20769061 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS14 | 20769036 | 20769061 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon15 | 20769129 | 20769142 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS15 | 20769129 | 20769142 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon16 | 20769214 | 20769245 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS16 | 20769214 | 20769245 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon17 | 20769733 | 20769777 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS17 | 20769733 | 20769777 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon18 | 20769994 | 20770007 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS18 | 20769994 | 20770007 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon19 | 20770076 | 20770125 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS19 | 20770076 | 20770125 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon20 | 20770188 | 20770223 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS20 | 20770188 | 20770223 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon21 | 20770422 | 20770439 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS21 | 20770422 | 20770439 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon22 | 20770501 | 20770527 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS22 | 20770501 | 20770527 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon23 | 20771073 | 20771107 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS23 | 20771073 | 20771107 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon24 | 20771167 | 20771184 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS24 | 20771167 | 20771184 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon25 | 20771244 | 20771261 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS25 | 20771244 | 20771261 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon26 | 20771323 | 20771367 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS26 | 20771323 | 20771367 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon27 | 20771438 | 20771453 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS27 | 20771438 | 20771453 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon28 | 20772404 | 20772434 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS28 | 20772404 | 20772434 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon29 | 20772499 | 20772540 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS29 | 20772499 | 20772540 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon30 | 20772677 | 20772740 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS30 | 20772677 | 20772740 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon31 | 20772800 | 20772840 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS31 | 20772800 | 20772840 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon32 | 20772896 | 20772935 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS32 | 20772896 | 20772935 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon33 | 20773100 | 20773162 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS33 | 20773100 | 20773162 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon34 | 20773253 | 20773307 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS34 | 20773253 | 20773307 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon35 | 20773376 | 20773433 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS35 | 20773376 | 20773433 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon36 | 20773488 | 20773518 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS36 | 20773488 | 20773518 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon37 | 20773678 | 20773732 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS37 | 20773678 | 20773732 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon38 | 20773835 | 20773888 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS38 | 20773835 | 20773888 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon39 | 20774114 | 20774139 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS39 | 20774114 | 20774139 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon40 | 20774199 | 20774243 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS40 | 20774199 | 20774243 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon41 | 20774357 | 20774374 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS41 | 20774357 | 20774374 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon42 | 20774440 | 20774484 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS42 | 20774440 | 20774484 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon43 | 20774580 | 20774605 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS43 | 20774580 | 20774605 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon44 | 20774670 | 20774687 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS44 | 20774670 | 20774687 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon45 | 20774753 | 20774806 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS45 | 20774753 | 20774806 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon46 | 20774879 | 20774905 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS46 | 20774879 | 20774905 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon47 | 20774968 | 20774977 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS47 | 20774968 | 20774977 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon48 | 20775039 | 20775083 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS48 | 20775039 | 20775083 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon49 | 20775139 | 20775314 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS49 | 20775139 | 20775314 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon50 | 20775375 | 20775384 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS50 | 20775375 | 20775384 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon51 | 20775451 | 20775459 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS51 | 20775451 | 20775459 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon52 | 20775558 | 20775576 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS52 | 20775558 | 20775576 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon53 | 20775637 | 20775664 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS53 | 20775637 | 20775664 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon54 | 20775724 | 20776012 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS54 | 20775724 | 20776012 |
| chr_2 | g7039 | g7039.t1 | exon | g7039.t1.exon55 | 20777919 | 20778165 |
| chr_2 | g7039 | g7039.t1 | cds | g7039.t1.CDS55 | 20777919 | 20778165 |
| chr_2 | g7039 | g7039.t1 | TTS | g7039.t1 | 20778084 | 20778084 |
| chr_2 | g7039 | g7039.t1 | TSS | g7039.t1 | 20778728 | 20778728 |
Sequences
>g7039.t1 Gene=g7039 Length=2550
ATGAGAATTAATAAAAAGTTGATTGTGATAATATGCATCGTCTTAATGCTTATAAATCTT
GGCGATGCAGCTGAAGAAAAGCAAAAAAAGAAGAAAAAATCAAAAAAATCTAAGAGTACA
AAAAATGTGCAATCTGATGCAGCTGCAAAAGAAAGACCGCAAAAACAACAGCCAGATTAT
AGTGAAATAGATAATTATGATAATTACGATGATAATTATGATGACAATGACCAAAATTTG
AATGAAGCTCGTAATGGACGTGAAGAAGGAATTGAAACTACAACACAATTTAAGCAACCA
GATGATGAAATTCCACAGCCCCTTCAAGCACCATTTTCATGTCGTTATGAAGGACAATGG
TATCGAGAAAATGAAGAATTCAAGACAGGTCCAAACGGATGTTCCATTTGTATTTGTATT
GATACTGAAGTGAAATGTAATGATGATAATTGCCAGCCTGCAACTACAACTGAATTGCCC
ACTACAACTCCTTTCATTCCTGGCCCAACCGGTGAAATTGGCCTACCTGGACATAGAGGT
GAACAAGGAGAACGAGGAGAACCAGGACAACCAGGAATGCCAGGTATCCCAGGTTTACCA
GGACCTCCTGGTCCACCACCAGATTTGAGTTTCTATACAGCACAATTGGCTGAACAATTA
GGCGGTTCAGATAAAGGACCAAGTGGGCCAAGCTTCCTACCAGAAAATTTTCAATATATG
CAAGCTGCAGTTGGTCCAAGCGGATCAAGGGGACCTCCAGGTCCACAAGGGCCATCTGGT
TTGCAAGGACATCAAGGAATAAGAGGTGAACCTGGAGAACCTGGTCCTCCTGGTCCACCA
GGTCCTCCTGGAATGATGGGGCCTCCAGGTCCACAAGGAAAAGATGGCCCAGCTGGAGAG
GATGGTGAACCTGGCGCTGTTGGACAACCTGGACCACCTGGACCGAGAGGATTGCCAGGC
ATGCCAGGTATGCCAGGAGTAAAGGGACATAGAGGATTTGCAGGAAGTGATGGAGCAAAA
GGTGAAGCTGGTACTCCAGGAGAAAAAGGATCTAAAGGAAATGTTGGCGCAGTTGGATTG
CCTGGACCACCTGGACCAGCAGGCCCACGAGGAGAAAGGGGAAGAGAAGGAAGCCCTGGT
CCAATTGGCTTGAGAGGAAATGATGGCGTTCAAGGAGCACCAGGTCCAATTGGTGCCCCT
GGAAAAAGTGGTCCTCCTGGATTTCCTGGAAGCCCAGGCAATAAAGGAGATATTGGTGAA
GTTGGACCGAAAGGGTCTCCAGGTCCACAAGGTCCTAGAGGAGAAGCTGGCAAACCAGGA
CCAACTGGAGATATCGGTCCTCCAGGTATCCCTGGAAAAGATGGCACACCGGGAGAAAAA
GGTGCAACCGGCAGTATGGGTCCATCAGGTCCGATTGGATTTCCTGGCCCAAGAGGACCA
CAAGGAGAACCTGGAGCAATGGGAGAACAAGGTTTCAAAGGCTCACAAGGTATTCCTGGT
GAAAGAGGAATAAAAGGAGAAGCGGGAACAAAAGGAGATATTGGGGCGCCAGGTCCACGA
GGATTGCCTGGAAATGAAGGCCCAGAAGGAAAAAGAGGAAAACGTGGCATGAGAGGACCA
ACTGGAGAACGTGGACCACAGGGAGAAAGAGGAGCTCCTGGCGCTGTTGGTTTACCCGGG
CCTGATGGACCAATTGGACCAAAAGGTGTTGCTGGTGATAGAGGAGCGACTGGTGAAAGA
GGTCCTAAAGGAAGTCAAGGAGATATTGGGCCTCCTGGTATTCAGGGACTTCAAGGACTT
CGTGGTATCCCAGGAAAAACAGGTCTTTCGGGAAAACCTGGTGAACAAGGTGAAAGAGGT
ATCCCAGGCAGTGATGGAAAACAAGGAGAACCTGGACCGCAAGGATTGCAAGGTCTTCCT
GGACCGATTGGATTACAAGGGGACAAAGGAATTCCTGGTGAAAATGGACGAGATGGCGAG
CCTGGACCACCTGGACAACCAGGCCCACGAGGTGATACAGGATTGCCGGGAAAAGACGGT
GCACAAGGACCACAAGGTCCACAAGGAATTCAAGGAGAAAGAGGAAATCCTGGCGCTGTT
GGTCCTCCTGGATTCCAAGGTCTACCAGGAGCTCCCGGCAACCCAGGACAACCTGGAAAA
GATGGCGCACAAGGACCTCCTGGAAGCCCTGGATTAATGGGACCAGCAGGAAATAGAGGA
GAAAGAGGATTTCCGGGTGAAAGAGGACCTATTGGTATTCCTGGAATACAAGGTTTAAAA
GGAGAAGTTGGTGCACAAGGTCCAGATGGAGATAATGGTCCTCCTGGACCTCCGGGACAA
AAAGGACATCAAGGTCCCCCCGGTATTATTGGCATTCCTGGAATGAGAGGTCCTCAAGGT
CTTTCTGGCGAGAAGGGTGAAAGAGGATCCCCGGGATTACAAGGAATAGAAGGTCCACCA
GGCAGAATTGGTGATAGAGGACTTCCCGGTAATATTGGTCCACCTGGCCCACCTGGGGAA
CCAGCTGAAAGGTATAATGAATTACCATAA
>g7039.t1 Gene=g7039 Length=849
MRINKKLIVIICIVLMLINLGDAAEEKQKKKKKSKKSKSTKNVQSDAAAKERPQKQQPDY
SEIDNYDNYDDNYDDNDQNLNEARNGREEGIETTTQFKQPDDEIPQPLQAPFSCRYEGQW
YRENEEFKTGPNGCSICICIDTEVKCNDDNCQPATTTELPTTTPFIPGPTGEIGLPGHRG
EQGERGEPGQPGMPGIPGLPGPPGPPPDLSFYTAQLAEQLGGSDKGPSGPSFLPENFQYM
QAAVGPSGSRGPPGPQGPSGLQGHQGIRGEPGEPGPPGPPGPPGMMGPPGPQGKDGPAGE
DGEPGAVGQPGPPGPRGLPGMPGMPGVKGHRGFAGSDGAKGEAGTPGEKGSKGNVGAVGL
PGPPGPAGPRGERGREGSPGPIGLRGNDGVQGAPGPIGAPGKSGPPGFPGSPGNKGDIGE
VGPKGSPGPQGPRGEAGKPGPTGDIGPPGIPGKDGTPGEKGATGSMGPSGPIGFPGPRGP
QGEPGAMGEQGFKGSQGIPGERGIKGEAGTKGDIGAPGPRGLPGNEGPEGKRGKRGMRGP
TGERGPQGERGAPGAVGLPGPDGPIGPKGVAGDRGATGERGPKGSQGDIGPPGIQGLQGL
RGIPGKTGLSGKPGEQGERGIPGSDGKQGEPGPQGLQGLPGPIGLQGDKGIPGENGRDGE
PGPPGQPGPRGDTGLPGKDGAQGPQGPQGIQGERGNPGAVGPPGFQGLPGAPGNPGQPGK
DGAQGPPGSPGLMGPAGNRGERGFPGERGPIGIPGIQGLKGEVGAQGPDGDNGPPGPPGQ
KGHQGPPGIIGIPGMRGPQGLSGEKGERGSPGLQGIEGPPGRIGDRGLPGNIGPPGPPGE
PAERYNELP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 33 | g7039.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 69 | - |
| 34 | g7039.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 376 | - |
| 32 | g7039.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 424 | 444 | - |
| 35 | g7039.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 564 | - |
| 36 | g7039.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 794 | 849 | - |
| 15 | g7039.t1 | PANTHER | PTHR24020:SF49 | COLLAGEN, TYPE XI, ALPHA 1A | 163 | 278 | 3.4E-150 |
| 21 | g7039.t1 | PANTHER | PTHR24020 | COLLAGEN ALPHA | 163 | 278 | 3.4E-150 |
| 14 | g7039.t1 | PANTHER | PTHR24020:SF49 | COLLAGEN, TYPE XI, ALPHA 1A | 241 | 410 | 3.4E-150 |
| 20 | g7039.t1 | PANTHER | PTHR24020 | COLLAGEN ALPHA | 241 | 410 | 3.4E-150 |
| 13 | g7039.t1 | PANTHER | PTHR24020:SF49 | COLLAGEN, TYPE XI, ALPHA 1A | 278 | 527 | 3.4E-150 |
| 19 | g7039.t1 | PANTHER | PTHR24020 | COLLAGEN ALPHA | 278 | 527 | 3.4E-150 |
| 10 | g7039.t1 | PANTHER | PTHR24020:SF49 | COLLAGEN, TYPE XI, ALPHA 1A | 397 | 645 | 3.4E-150 |
| 16 | g7039.t1 | PANTHER | PTHR24020 | COLLAGEN ALPHA | 397 | 645 | 3.4E-150 |
| 12 | g7039.t1 | PANTHER | PTHR24020:SF49 | COLLAGEN, TYPE XI, ALPHA 1A | 503 | 737 | 3.4E-150 |
| 18 | g7039.t1 | PANTHER | PTHR24020 | COLLAGEN ALPHA | 503 | 737 | 3.4E-150 |
| 11 | g7039.t1 | PANTHER | PTHR24020:SF49 | COLLAGEN, TYPE XI, ALPHA 1A | 647 | 840 | 3.4E-150 |
| 17 | g7039.t1 | PANTHER | PTHR24020 | COLLAGEN ALPHA | 647 | 840 | 3.4E-150 |
| 3 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 168 | 205 | 7.7E-7 |
| 1 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 245 | 303 | 4.7E-10 |
| 4 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 299 | 357 | 1.8E-10 |
| 5 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 359 | 416 | 2.5E-9 |
| 6 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 401 | 459 | 1.1E-7 |
| 8 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 455 | 513 | 2.8E-8 |
| 2 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 509 | 566 | 6.7E-8 |
| 7 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 566 | 623 | 1.0E-7 |
| 9 | g7039.t1 | Pfam | PF01391 | Collagen triple helix repeat (20 copies) | 785 | 841 | 1.5E-8 |
| 26 | g7039.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 23 | - |
| 27 | g7039.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 28 | g7039.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 18 | - |
| 29 | g7039.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 19 | 23 | - |
| 25 | g7039.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 24 | 849 | - |
| 22 | g7039.t1 | SUPERFAMILY | SSF57603 | FnI-like domain | 112 | 160 | 8.27E-7 |
| 24 | g7039.t1 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 23 | - |
| 30 | g7039.t1 | SignalP_GRAM_NEGATIVE | SignalP-noTM | SignalP-noTM | 1 | 24 | - |
| 23 | g7039.t1 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 23 | - |
| 31 | g7039.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 24 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K19719 (collagen type II alpha)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed