Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein Jumonji.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7046 g7046.t1 TSS g7046.t1 20789293 20789293
chr_2 g7046 g7046.t1 isoform g7046.t1 20789399 20795335
chr_2 g7046 g7046.t1 exon g7046.t1.exon1 20789399 20789463
chr_2 g7046 g7046.t1 cds g7046.t1.CDS1 20789399 20789463
chr_2 g7046 g7046.t1 exon g7046.t1.exon2 20789572 20791129
chr_2 g7046 g7046.t1 cds g7046.t1.CDS2 20789572 20791129
chr_2 g7046 g7046.t1 TTS g7046.t1 20790228 20790228
chr_2 g7046 g7046.t1 exon g7046.t1.exon3 20791190 20794438
chr_2 g7046 g7046.t1 cds g7046.t1.CDS3 20791190 20794438
chr_2 g7046 g7046.t1 exon g7046.t1.exon4 20794507 20794689
chr_2 g7046 g7046.t1 cds g7046.t1.CDS4 20794507 20794689
chr_2 g7046 g7046.t1 exon g7046.t1.exon5 20794744 20794902
chr_2 g7046 g7046.t1 cds g7046.t1.CDS5 20794744 20794902
chr_2 g7046 g7046.t1 exon g7046.t1.exon6 20794955 20795335
chr_2 g7046 g7046.t1 cds g7046.t1.CDS6 20794955 20795335

Sequences

>g7046.t1 Gene=g7046 Length=5595
ATGGTGGTCTCAAAACGTAAAAAGGATAATAAGGAAGTAGCATCAGCAACGCCTGAATTA
AAAAGAACGAAAATTCAAGCACAGAGAAAGTTTGCTCAAGGTCAAAATCCACCATCGTCT
GCATATCTCACCTATAATTTAACAGCTGGAAATGAGACTCCACAGCGAGAAAAATCACCA
GAAAGAGAACTTCTTCCAAATTTGCGACCCAATACTGAAGATTTTTTAACATTCTTGTGT
TTTCGTGGCACAAGTTCGTTACCAAAAGAACTTGATTTTACCAATTCTCTCAATCAGCCT
TCTACAAGTGGAGCATCAACGAGTTCAAAAGCAACTCCTGACAAAAAGAAACAGGATAAA
AATGAATCAAATAAGAAAAAATCTGTTAGTGTAAAAAAGAATGAGGAAGTGCTATCAACG
CCACAAATTAAAGAAACCGAAAAGGAAACTAAACATCCACCACCTCCACTAATCACAGAA
AAAGATCCTAAAACTGGTTTTATGCCATTTGCAGTTAGGAAAAGAGCTGAAGTGCATCCA
GTAAAAAATGATAAGAAAAAATTGCAACCAAATGCTAATAAAAAGAACAGCAATAACAAT
AAGCAGCAGCAATCTCAAAAATCTGATGTTACTGAAAAAGATTTATCATCAAATGGACCA
CGTACAACAAGATCAACTCCTTTAGAAGAGAAACCACAACAAAATCATGATGATTCAAAA
ACAAAAAATAATAAAAGAAAATCACAAAATGATGAAGAGCATAACGAAAGTGTCACATCA
ACTTCATTTAAAAATATTAAGCTTGATAAATCGCCACGAATTGAACTAACTCCAATAGAA
AAAGTGCCAATTGAAACAGTAAAGAAAGATTCTAAAACTAATAATAATCAAGTAAAGAAA
AAATCACCCATTAATAAAAAAGAAGATGACAAACGACAGACAAGACTTTCTTCACTCAAA
AATCCAGCCTCATCGACACCAAAAGATGAGATGAAAAATGGAAAACAAACGCCAGAATTA
AAAAAATATTTCTCCTCATCAGAAGATGACGATGAACCGTTAGTTAAAATAGAGCCCAAA
AATAAGAAACAAAAAGTGCAAAATGAAAGCAAAAAAATTGACGTGGAGAAAATTGAAACG
ACCATTAAAAATAACTCAATCAATAATAAGTCACAGCAAAATGATACACAAAATTCAAGC
TTGAAATCAATAAGAGGGCGCAAGAAAAAAGCTGCTTCTGTGGAAAAAGAGAAAACTCCT
GAGCCAGAAAAATCAAAGGTACAAGAACCAATGTTTGATGACTCTGCTGAAAAGAAAAAA
GTTGGAAGGAAAAAAAAATTATTAATTGAAAATGAAAAGGCAAATTCTCAAGCAAATACA
ACGGATTTGAGTGAAAATGAGACACGAGGTAGACCTATGCGAAAAACGAAAGAAGCCGCC
ACAATTTATATGGAGCTTATAGGAAGAAAATTGACCTTACATGACTCTTCTGATAATGAT
TCTTCACTAGATAGTCTCGAAGTTCCGAATCTCAAAAGAGTAGAATTTTTGGAGAATGAA
ATGAAAGCAGGAATTGAAAAAGAAAAAGCAGAAAAGAAGAAAGCCGAGGAAAAGGAAAAG
AAGGCACAAGAGGCCAAAAAATCTAACAATTCAACATCTCAAGATAGGCAAGATTCAAAA
AACACGAAAGGAAAACGCGGAGCAACCAGAGAAGAAGAACATAAGAAGGAAGAAAAGAAA
AATGTTACAAACGAAAAGTCTGGTGATGAAACTAAACTAGAAAAGAGCTTTAGTGATTCA
GATGAAGAACCACTTGCTACAAAAATGGCAAAACAATCTTCTAAACCTACACCGAAAAAG
CGTGGTAGGAAAAGTCATCAAGAACTTGCTGAAATGGCAAGAAAAGCAGAAGAGCAACGA
CAAGCTGAAATGTTAAAACAGCAAATAAAGAAACTTTCTGCGTCACCAAAATCCGAAGAA
AATGTCATATCAGTGGTACCACAACAAAACCTTCTGTTGTCTGCTAAAACAATAAATGCA
AATTCAAGTCAAATACAATCTAATAACGTTAAATCTCCAAACACATCACAAAATGATAAT
AAAATTCAAAAGGATTCAGCAATTGTCAAGAGTGCATTTGATGAAATTAAAAGCACACCT
TCTGTAAAGGTAAAATCACCAGAAACTTTAAACAAGTCTCATGAGGTCAAAGCAGAAGAT
GAAATTATGAATGATGATGACTTTTTCGTAAAGAAATTTGATTCATCGACAGCAAAGCCT
GCATCATCATCAAAACCATCAATCAATCTTTTACCAAGCAAAGAGGAATCTGAAAAGATT
TTCGGAATAGCAAGCGTAACTCTTGCACAGAGTAGTGGACCATTAGATACAAAATGCACT
TTAGGAAAATGTGGATCTATACATAAACCACCACTTGGTCCTGCAGTGCTCACTGAATCA
GCATTAGGTGCAAGTCTTTCTCCAAAAGATCGTCGTAAGAGCAAAGTTAACATGACACGA
GAGCAAATACAAAAATGGCTCGATGAAGCTTCATGGACACCGATTCCAGATGATGAAATG
GATTCAATAGATTTGAAAACAGCATCAACATCAAGTGCTGTTCTCTCTAAATCAGGAGAT
GACTCTCAGTCTTCCAATCAAACTAAGGATAAAATAGTCACTGATCAGTCGACAACTAAT
TTTAAAGACCTCACACCAAAATCCAAATCAGAATCATCTCCACAGAAATCTACTGCTTCT
AAAGTTGAACAAAAAACGAAGAGTCCAACACTTTTGAAAATTGATGAAGTACAGCAAAAG
AAACAGCAACAACAAGAACTTTTGAACATTTCATTTGATTCTAAAGCATCAAGCTCAACG
CCAGCAGTGAACAATAAAAAAACTCCAGTATATCAACAACATCAACAGCAGCAACAACGT
CGAACGCCAGTGTATAAAGCCGTTGATAACAAAACGACTGCAAAATCAAAGTTAACACCC
GTATTGCAAAGCAGTTTTGGTGCCTTTTCACCTGAAAATGAACATAGTATTTACTCATTT
GACCGTGAGGATGATGATTTTCCTACACCTACAACACCATTCCGAAGCAATTCAAAAACC
GATGATAGAAAAGATGAGCCCAAATTAGTTACACCGACAAAGCAATCAACCACACAGCCT
TCTCATGTATCACTCACTCTTAGTCCTGATGATAATAAAAAGTCGGCATCAATTAGTGTT
GAAATGACGGATGATAAAAAGAACAGTTCAAATAGCATTGCAAAACCTGATCAAGAAAAA
GATGCTGATGATTCTGATTCTGAGGGTCACACATTTTACATTCCCTTACAAGCATCAAAT
GTTTCTGGTAGTAAAACGATTCAAGGAGTTGCTGTTAAGCTAGGAACAGAGGGATCCGAA
GGTCCAAATCAGAGAATAATTATGCATGCAAAACTCGTAACAAAGTCTCGGATTAATGCA
ACACCATTACCTGAATCAATGACTAATGTTCAAGAACTGGTGAAAACTTTAATGGCCAAC
AAAGAAACTTCTAAACCAGTTCAACCAGTGCAACCTCGATTTAAATCAAATGATGGAACT
GAAGTAAGTACATCTCTTCAGCCAGAGCCAAGTACGTCAAGTTTAGTTGCCAATCAAAGA
ACCAAACAACAAGCTCCCAAGTTAGGAGTAATGACTGAAGCACCAATATTTAGACCAACT
GAAAAAGAATTCCAAGATCCAATTGAATATATTGAACGCATTACACCACTTGCACAGCGA
TTTGGAATTTGTAGAATCATTCCACCATCAAGTTTCAAACCAGAATGTCGAGTGAGCGAT
GAAATGCGGTTTACAGCTTATAATCAATATGTACACAAAATGCTTCATCGTTGGGGACCA
TCAATGAAAGAATTTTCAGCAATTAAAAAGTATTTGGCAACACAGAGCATTCAGTTGCAG
CGACCACCATTAATTGCAGGCATTGAAGTCGATTTACCACGTTTATATCATACTGTACAA
GAACTTGGTGGCTTAAAAGAAGTCATTGAGAAGAAAAAGTGGGCAAAAGTTGCTGAAGAT
ATGTGCATACCAAAATCTGCACATGACCGCATCACAAAACTTGATGACATTTATTGCAAA
TATTTACTGCCCTATGACACACTTTCACCAAATGAACGTCAGAAATTGTTTGATGAAGTT
GAGGCTGATTGGGCAAAACGTGAGGCAAAGGCACGTCGTAATGCAGATAAAGGTGTAGAA
TCGGATGAACAAAATTCAGAGGATGAGGATGAGGATGATGAAGATGAAGAAGAGGAAGAT
GACAATTCATCGATGGAATGTATGGTGAAAGGCCGAAGTATGGCACTAAGTCAATTTTAT
CGTATTGCAAGAAATATGGTAACTCTTTGGTTCAAAACACCTGAACCAACAAATGCAGAG
ATTGAAACAGAATATTGGCGTCACGTGGCTGTTCGTGACAGTCACGTGTGCGTACATTAT
GGCTCAATTGATTCAAGTGGTTATGGCTATGGTTTTCCTACTCCTGGACCAAAAACAAAA
CTGTCACCGTGTGCGAAACATCCATGGAATTTAAAAGTGTTGACAAATAATTGTGGCTCA
ATATTGAGATCACTTGGACCAGTAATGGGAGTAACAGTTCCTACACTACATGTTGGCATG
CTCTTCAGTGCAGTCTGTTGGTATCGAGATCCACATGGTCTGCCTTGGATTGAATATCTT
CATACAGGCGCTAGTAAAATTTGGTATGCAGTGCCAGACGAACAAAGTGCGAATTTTCGT
GCAGCGCTTACATCATTAGTTCCTTCACATTGTCAAAACAAGACGATATGGCTGCCATGT
GATACAGCTATGGTTCCTCCATATATGCTCACAGATAGAAATGTTTCATTATGCCGCACA
GAGCAACAACCGGGACAATTTGTTGTCGTTTTCCCAAGAGCTTATACATCGAGTGTGTGT
ACAGGTTATACAGTATCTGAAAGTGTATATTTCGCCACTCACAGTTGGCTTGATACTGCG
CATCTTGATTTTAAAGATATTCAAGAGAGCTGTGAACCAACAATGTTTTCGCTCGAACAG
TTGCTATTTGCAATTGCTAATGATCAGAGAAGCAAAGATGAGACAATAAAAAAGATTTTA
CCAATGTTGAAAGATGCATCGGATGCTGAAAAGATTAATCGTCAGGCATTAAAAGACGCT
GGTGTAAATGCAACAGAGAAAATTCATGAAGTGAAAAATAAAGTTAATGCCGAAGAATTG
GAATGTAACTATTGTCGTGCAAATTTACATATCTCTTGGATTAAGTTGGAAGATGAAGAA
GAGGAGGGTGATGAAAATAATGTTTACTGCTTGAAGCATGCTTTAAAATATATAAAAGAT
AATCGCATTCAAGCTGGGCAGTGTAAATTACTGTACACATATACGATGGATGAGATTGAG
AAACTTATTAAACGACTAAAAACAAGAGTCACTGAAGATGAAACAACAACTGCCACCGTC
GGTCAATCATCATCAACTCATGATTCGCAACGCAAAAATAAATCCAATCAGAAAACTAAA
TCAACAGGTAAATAA

>g7046.t1 Gene=g7046 Length=1864
MVVSKRKKDNKEVASATPELKRTKIQAQRKFAQGQNPPSSAYLTYNLTAGNETPQREKSP
ERELLPNLRPNTEDFLTFLCFRGTSSLPKELDFTNSLNQPSTSGASTSSKATPDKKKQDK
NESNKKKSVSVKKNEEVLSTPQIKETEKETKHPPPPLITEKDPKTGFMPFAVRKRAEVHP
VKNDKKKLQPNANKKNSNNNKQQQSQKSDVTEKDLSSNGPRTTRSTPLEEKPQQNHDDSK
TKNNKRKSQNDEEHNESVTSTSFKNIKLDKSPRIELTPIEKVPIETVKKDSKTNNNQVKK
KSPINKKEDDKRQTRLSSLKNPASSTPKDEMKNGKQTPELKKYFSSSEDDDEPLVKIEPK
NKKQKVQNESKKIDVEKIETTIKNNSINNKSQQNDTQNSSLKSIRGRKKKAASVEKEKTP
EPEKSKVQEPMFDDSAEKKKVGRKKKLLIENEKANSQANTTDLSENETRGRPMRKTKEAA
TIYMELIGRKLTLHDSSDNDSSLDSLEVPNLKRVEFLENEMKAGIEKEKAEKKKAEEKEK
KAQEAKKSNNSTSQDRQDSKNTKGKRGATREEEHKKEEKKNVTNEKSGDETKLEKSFSDS
DEEPLATKMAKQSSKPTPKKRGRKSHQELAEMARKAEEQRQAEMLKQQIKKLSASPKSEE
NVISVVPQQNLLLSAKTINANSSQIQSNNVKSPNTSQNDNKIQKDSAIVKSAFDEIKSTP
SVKVKSPETLNKSHEVKAEDEIMNDDDFFVKKFDSSTAKPASSSKPSINLLPSKEESEKI
FGIASVTLAQSSGPLDTKCTLGKCGSIHKPPLGPAVLTESALGASLSPKDRRKSKVNMTR
EQIQKWLDEASWTPIPDDEMDSIDLKTASTSSAVLSKSGDDSQSSNQTKDKIVTDQSTTN
FKDLTPKSKSESSPQKSTASKVEQKTKSPTLLKIDEVQQKKQQQQELLNISFDSKASSST
PAVNNKKTPVYQQHQQQQQRRTPVYKAVDNKTTAKSKLTPVLQSSFGAFSPENEHSIYSF
DREDDDFPTPTTPFRSNSKTDDRKDEPKLVTPTKQSTTQPSHVSLTLSPDDNKKSASISV
EMTDDKKNSSNSIAKPDQEKDADDSDSEGHTFYIPLQASNVSGSKTIQGVAVKLGTEGSE
GPNQRIIMHAKLVTKSRINATPLPESMTNVQELVKTLMANKETSKPVQPVQPRFKSNDGT
EVSTSLQPEPSTSSLVANQRTKQQAPKLGVMTEAPIFRPTEKEFQDPIEYIERITPLAQR
FGICRIIPPSSFKPECRVSDEMRFTAYNQYVHKMLHRWGPSMKEFSAIKKYLATQSIQLQ
RPPLIAGIEVDLPRLYHTVQELGGLKEVIEKKKWAKVAEDMCIPKSAHDRITKLDDIYCK
YLLPYDTLSPNERQKLFDEVEADWAKREAKARRNADKGVESDEQNSEDEDEDDEDEEEED
DNSSMECMVKGRSMALSQFYRIARNMVTLWFKTPEPTNAEIETEYWRHVAVRDSHVCVHY
GSIDSSGYGYGFPTPGPKTKLSPCAKHPWNLKVLTNNCGSILRSLGPVMGVTVPTLHVGM
LFSAVCWYRDPHGLPWIEYLHTGASKIWYAVPDEQSANFRAALTSLVPSHCQNKTIWLPC
DTAMVPPYMLTDRNVSLCRTEQQPGQFVVVFPRAYTSSVCTGYTVSESVYFATHSWLDTA
HLDFKDIQESCEPTMFSLEQLLFAIANDQRSKDETIKKILPMLKDASDAEKINRQALKDA
GVNATEKIHEVKNKVNAEELECNYCRANLHISWIKLEDEEEEGDENNVYCLKHALKYIKD
NRIQAGQCKLLYTYTMDEIEKLIKRLKTRVTEDETTTATVGQSSSTHDSQRKNKSNQKTK
STGK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g7046.t1 CDD cd16870 ARID_JARD2 1297 1408 1.04343E-54
16 g7046.t1 Coils Coil Coil 518 555 -
17 g7046.t1 Coils Coil Coil 565 585 -
18 g7046.t1 Coils Coil Coil 626 655 -
15 g7046.t1 Coils Coil Coil 1816 1836 -
14 g7046.t1 Gene3D G3DSA:1.10.150.60 - 1289 1409 4.1E-47
13 g7046.t1 Gene3D G3DSA:2.60.120.650 Cupin 1415 1691 2.6E-66
38 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 69 -
51 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1 26 -
46 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 28 54 -
34 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 91 477 -
53 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 91 111 -
47 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 112 158 -
28 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 175 191 -
29 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 192 229 -
35 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 230 258 -
37 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 268 316 -
33 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 317 331 -
44 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 332 379 -
41 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 380 401 -
42 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 408 451 -
52 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 452 466 -
36 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 492 661 -
54 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 511 546 -
27 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 558 608 -
45 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 623 645 -
49 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 646 661 -
26 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 681 702 -
32 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 873 935 -
40 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 952 985 -
25 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1019 1107 -
48 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1051 1087 -
31 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1088 1107 -
39 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1182 1225 -
50 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1408 1447 -
43 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1422 1443 -
24 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1833 1864 -
30 g7046.t1 MobiDBLite mobidb-lite consensus disorder prediction 1833 1850 -
6 g7046.t1 PANTHER PTHR10694:SF117 JUMONJI, AT RICH INTERACTIVE DOMAIN 2 759 858 5.7E-259
9 g7046.t1 PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE 759 858 5.7E-259
5 g7046.t1 PANTHER PTHR10694:SF117 JUMONJI, AT RICH INTERACTIVE DOMAIN 2 1096 1191 5.7E-259
8 g7046.t1 PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE 1096 1191 5.7E-259
7 g7046.t1 PANTHER PTHR10694:SF117 JUMONJI, AT RICH INTERACTIVE DOMAIN 2 1249 1824 5.7E-259
10 g7046.t1 PANTHER PTHR10694 LYSINE-SPECIFIC DEMETHYLASE 1249 1824 5.7E-259
1 g7046.t1 Pfam PF02375 jmjN domain 1235 1268 4.2E-15
3 g7046.t1 Pfam PF01388 ARID/BRIGHT DNA binding domain 1306 1386 5.8E-15
2 g7046.t1 Pfam PF02373 JmjC domain, hydroxylase 1556 1671 5.3E-21
4 g7046.t1 Pfam PF02928 C5HC2 zinc finger 1762 1822 3.2E-6
56 g7046.t1 ProSiteProfiles PS51183 JmjN domain profile. 1234 1275 17.666
55 g7046.t1 ProSiteProfiles PS51011 ARID domain profile. 1298 1390 21.97
57 g7046.t1 ProSiteProfiles PS51184 JmjC domain profile. 1523 1688 29.272
23 g7046.t1 SMART SM00545 JmjN_1 1233 1274 6.6E-21
22 g7046.t1 SMART SM01014 ARID_2 1296 1386 2.9E-22
21 g7046.t1 SMART SM00501 bright_3 1300 1391 1.8E-18
20 g7046.t1 SMART SM00558 cupin_9 1523 1683 7.1E-17
12 g7046.t1 SUPERFAMILY SSF46774 ARID-like 1282 1398 8.89E-25
11 g7046.t1 SUPERFAMILY SSF51197 Clavaminate synthase-like 1520 1703 6.04E-12

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003677 DNA binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values