General information for g7046.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g7046 is located on chr_2: 20795335..20796692 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7046 | g7046.t2 | TSS | g7046.t2 | 20789293 | 20789293 |
| chr_2 | g7046 | g7046.t2 | isoform | g7046.t2 | 20789399 | 20791129 |
| chr_2 | g7046 | g7046.t2 | exon | g7046.t2.exon1 | 20789399 | 20789463 |
| chr_2 | g7046 | g7046.t2 | cds | g7046.t2.CDS1 | 20789399 | 20789463 |
| chr_2 | g7046 | g7046.t2 | exon | g7046.t2.exon2 | 20789572 | 20791129 |
| chr_2 | g7046 | g7046.t2 | cds | g7046.t2.CDS2 | 20789572 | 20791129 |
| chr_2 | g7046 | g7046.t2 | TTS | g7046.t2 | 20791094 | 20791094 |
Sequences
>g7046.t2 Gene=g7046 Length=1623
ATGGTGGTCTCAAAACGTAAAAAGGATAATAAGGAAGTAGCATCAGCAACGCCTGAATTA
AAAAGAACGAAAATTCAAGCACAGAGAAAGTTTGCTCAAGGTCAAAATCCACCATCGTCT
GCATATCTCACCTATAATTTAACAGCTGGAAATGAGACTCCACAGCGAGAAAAATCACCA
GAAAGAGAACTTCTTCCAAATTTGCGACCCAATACTGAAGATTTTTTAACATTCTTGTGT
TTTCGTGGCACAAGTTCGTTACCAAAAGAACTTGATTTTACCAATTCTCTCAATCAGCCT
TCTACAAGTGGAGCATCAACGAGTTCAAAAGCAACTCCTGACAAAAAGAAACAGGATAAA
AATGAATCAAATAAGAAAAAATCTGTTAGTGTAAAAAAGAATGAGGAAGTGCTATCAACG
CCACAAATTAAAGAAACCGAAAAGGAAACTAAACATCCACCACCTCCACTAATCACAGAA
AAAGATCCTAAAACTGGTTTTATGCCATTTGCAGTTAGGAAAAGAGCTGAAGTGCATCCA
GTAAAAAATGATAAGAAAAAATTGCAACCAAATGCTAATAAAAAGAACAGCAATAACAAT
AAGCAGCAGCAATCTCAAAAATCTGATGTTACTGAAAAAGATTTATCATCAAATGGACCA
CGTACAACAAGATCAACTCCTTTAGAAGAGAAACCACAACAAAATCATGATGATTCAAAA
ACAAAAAATAATAAAAGAAAATCACAAAATGATGAAGAGCATAACGAAAGTGTCACATCA
ACTTCATTTAAAAATATTAAGCTTGATAAATCGCCACGAATTGAACTAACTCCAATAGAA
AAAGTGCCAATTGAAACAGTAAAGAAAGATTCTAAAACTAATAATAATCAAGTAAAGAAA
AAATCACCCATTAATAAAAAAGAAGATGACAAACGACAGACAAGACTTTCTTCACTCAAA
AATCCAGCCTCATCGACACCAAAAGATGAGATGAAAAATGGAAAACAAACGCCAGAATTA
AAAAAATATTTCTCCTCATCAGAAGATGACGATGAACCGTTAGTTAAAATAGAGCCCAAA
AATAAGAAACAAAAAGTGCAAAATGAAAGCAAAAAAATTGACGTGGAGAAAATTGAAACG
ACCATTAAAAATAACTCAATCAATAATAAGTCACAGCAAAATGATACACAAAATTCAAGC
TTGAAATCAATAAGAGGGCGCAAGAAAAAAGCTGCTTCTGTGGAAAAAGAGAAAACTCCT
GAGCCAGAAAAATCAAAGGTACAAGAACCAATGTTTGATGACTCTGCTGAAAAGAAAAAA
GTTGGAAGGAAAAAAAAATTATTAATTGAAAATGAAAAGGCAAATTCTCAAGCAAATACA
ACGGATTTGAGTGAAAATGAGACACGAGGTAGACCTATGCGAAAAACGAAAGAAGCCGCC
ACAATTTATATGGAGCTTATAGGAAGAAAATTGACCTTACATGACTCTTCTGATAATGAT
TCTTCACTAGATAGTCTCGAAGTTCCGAATCTCAAAAGAGTAGAATTTTTGGAGAATGAA
ATGAAAGCAGGAATTGAAAAAGAAAAAGCAGAAAAGAAGAAAGCCGAGGAAAAGGAAAAG
AAG
>g7046.t2 Gene=g7046 Length=541
MVVSKRKKDNKEVASATPELKRTKIQAQRKFAQGQNPPSSAYLTYNLTAGNETPQREKSP
ERELLPNLRPNTEDFLTFLCFRGTSSLPKELDFTNSLNQPSTSGASTSSKATPDKKKQDK
NESNKKKSVSVKKNEEVLSTPQIKETEKETKHPPPPLITEKDPKTGFMPFAVRKRAEVHP
VKNDKKKLQPNANKKNSNNNKQQQSQKSDVTEKDLSSNGPRTTRSTPLEEKPQQNHDDSK
TKNNKRKSQNDEEHNESVTSTSFKNIKLDKSPRIELTPIEKVPIETVKKDSKTNNNQVKK
KSPINKKEDDKRQTRLSSLKNPASSTPKDEMKNGKQTPELKKYFSSSEDDDEPLVKIEPK
NKKQKVQNESKKIDVEKIETTIKNNSINNKSQQNDTQNSSLKSIRGRKKKAASVEKEKTP
EPEKSKVQEPMFDDSAEKKKVGRKKKLLIENEKANSQANTTDLSENETRGRPMRKTKEAA
TIYMELIGRKLTLHDSSDNDSSLDSLEVPNLKRVEFLENEMKAGIEKEKAEKKKAEEKEK
K
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 17 | g7046.t2 | Coils | Coil | Coil | 518 | 538 | - |
| 8 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - |
| 14 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - |
| 12 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 54 | - |
| 5 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 477 | - |
| 16 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 91 | 111 | - |
| 13 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 158 | - |
| 2 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 191 | - |
| 3 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 229 | - |
| 6 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 258 | - |
| 7 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 316 | - |
| 4 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 331 | - |
| 11 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 379 | - |
| 9 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 401 | - |
| 10 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 451 | - |
| 15 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 466 | - |
| 1 | g7046.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 520 | 541 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed