General information for g7052.t20
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Uridine phosphorylase 1.
Parent gene
- The parent gene g7052 is located on chr_2: 20868468..20871007 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7052 | g7052.t20 | TTS | g7052.t20 | 20867324 | 20867324 |
| chr_2 | g7052 | g7052.t20 | isoform | g7052.t20 | 20867448 | 20871007 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon1 | 20867448 | 20867743 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS1 | 20867448 | 20867743 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon2 | 20867803 | 20867944 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS2 | 20867803 | 20867944 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon3 | 20868001 | 20868080 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS3 | 20868001 | 20868080 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon4 | 20868464 | 20868547 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS4 | 20868464 | 20868547 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon5 | 20868646 | 20868691 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS5 | 20868646 | 20868691 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon6 | 20869164 | 20869301 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS6 | 20869164 | 20869301 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon7 | 20869378 | 20869510 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS7 | 20869378 | 20869510 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon8 | 20869555 | 20869779 |
| chr_2 | g7052 | g7052.t20 | cds | g7052.t20.CDS8 | 20869555 | 20869739 |
| chr_2 | g7052 | g7052.t20 | exon | g7052.t20.exon9 | 20870837 | 20871007 |
| chr_2 | g7052 | g7052.t20 | TSS | g7052.t20 | 20871007 | 20871007 |
Sequences
>g7052.t20 Gene=g7052 Length=1315
AGTTTTGTGTTTAGTCTCGTGTTGTTCAGTAAGAAGTTTAAAAAGAAAAAGAGTGAGAAG
AAAAAATACTTTTTAAAAAAATCTCAAGAAAATTTCAAGTTTTTTGTTTGGTGTCCAAAA
AGAAAAAGGTTAAATACCTGTTACGTAAAAGAAAAAGAACAGAAAGAGGAAATCATTTGA
ATAAAATATTTGCGTGGAATTTTAAAGAAAAATGTCAGTCATTCAATCGATCGATATGGA
TGATATCTATAAAGAGTTGAAAAACAATACAATTAAAATTGATGCAAATGGAAATGATAT
TTCATCTGAAGAAGATTCTGGTTCAGCAACAAGTGATTCAATTGAAGAGAATGAAAATGA
AAGCATAGAGCAATTAAAATTGCGAAGTCTTACACGAAATTGCAGATATAATGATGGAAG
TGTTAAATTAAGAAATCCATATATTGAGCAATTGGAATCAGATTATCTCTATCATTTATC
ATTGGGAAGTGCTTCACATGACTTGCATGAAATGTTTGGTGATGTTAAATTTGTCTGTAT
GGGAGGAACATCTTCTAGAATGAAAGACTTTGCATATTATGTGATGAAAGAAATTGGTCA
TAAACTTCCAGCAGGCACACAATTACAAGACATAAGTGAGCTTTCTGGCCGTTATTCAAT
GTATAAGGTTGGCCCGGTTCTTTCGGTGTCTCATGGCATGGGAACTCCGTCGATTGGGAT
TTTACTTCATGAGATTATAAAGCTGATGTACCACGCAAAATGTAAAGATCCAACTTTCTT
CAGAATCGGAACATGTGGTGGGATTGGTATTGATGGAGGTACTGTAGTCGTTTCTAATGA
AGGAGTTGATGGCTGCTTAAGAAATACCTACGAAGTTGCGGTTCTTGGAAAAAATATATC
TCGCCCAGCAAAACTTGATCAGAAATTAGCTCGTGAACTGATGTCACTAGCAGATCTTGA
GCGCGATGGATATGAAACAGTTTGCGGCAAAACAATGTGTGCCAATGACTTCTATGAAGG
ACAAGGACGTCTGGATGGAGCATTTTGTGATTTTACAGAAAAAGATAAAATGAATTTTTT
GCACAAATGTAAAGACTTTGGTGTTGTAAACATTGAAATGGAAGCGACAATTTTTGGTGC
ATTGACATATCATGCAGGAATCAAAGCTGCAATCGTTTGTGTCGCACTGCTAAACCGTTT
AAAAGGAGATCAAGTAAGTACACCAAAAGATATAATGTTGGAATGGCAAAAACGACCTCA
AGTGCTTGTTTCACGATATATCAAAAAGAAATTACGTTTAAGTCATGGACATTAG
>g7052.t20 Gene=g7052 Length=367
MSVIQSIDMDDIYKELKNNTIKIDANGNDISSEEDSGSATSDSIEENENESIEQLKLRSL
TRNCRYNDGSVKLRNPYIEQLESDYLYHLSLGSASHDLHEMFGDVKFVCMGGTSSRMKDF
AYYVMKEIGHKLPAGTQLQDISELSGRYSMYKVGPVLSVSHGMGTPSIGILLHEIIKLMY
HAKCKDPTFFRIGTCGGIGIDGGTVVVSNEGVDGCLRNTYEVAVLGKNISRPAKLDQKLA
RELMSLADLERDGYETVCGKTMCANDFYEGQGRLDGAFCDFTEKDKMNFLHKCKDFGVVN
IEMEATIFGALTYHAGIKAAIVCVALLNRLKGDQVSTPKDIMLEWQKRPQVLVSRYIKKK
LRLSHGH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g7052.t20 | CDD | cd17763 | UP_hUPP-like | 83 | 359 | 0.0 |
| 7 | g7052.t20 | Gene3D | G3DSA:3.40.50.1580 | - | 59 | 364 | 4.5E-111 |
| 5 | g7052.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 45 | - |
| 6 | g7052.t20 | MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - |
| 2 | g7052.t20 | PANTHER | PTHR43691:SF3 | FI09636P-RELATED | 66 | 361 | 1.3E-123 |
| 3 | g7052.t20 | PANTHER | PTHR43691 | URIDINE PHOSPHORYLASE | 66 | 361 | 1.3E-123 |
| 1 | g7052.t20 | Pfam | PF01048 | Phosphorylase superfamily | 107 | 357 | 7.6E-26 |
| 4 | g7052.t20 | SUPERFAMILY | SSF53167 | Purine and uridine phosphorylases | 87 | 358 | 3.12E-44 |
| 8 | g7052.t20 | TIGRFAM | TIGR01719 | euk_UDPppase: uridine phosphorylase | 75 | 361 | 2.3E-126 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004850 | uridine phosphorylase activity | MF |
| GO:0009116 | nucleoside metabolic process | BP |
| GO:0003824 | catalytic activity | MF |
| GO:0005737 | cytoplasm | CC |
| GO:0009166 | nucleotide catabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K00757 (uridine phosphorylase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed