Gene loci information

Transcript annotation

  • This transcript has been annotated as Nucleolar GTP-binding protein 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7074 g7074.t13 isoform g7074.t13 21005322 21006270
chr_2 g7074 g7074.t13 exon g7074.t13.exon1 21005322 21006141
chr_2 g7074 g7074.t13 cds g7074.t13.CDS1 21005323 21006141
chr_2 g7074 g7074.t13 exon g7074.t13.exon2 21006241 21006270
chr_2 g7074 g7074.t13 cds g7074.t13.CDS2 21006241 21006270
chr_2 g7074 g7074.t13 TSS g7074.t13 21006346 21006346
chr_2 g7074 g7074.t13 TTS g7074.t13 NA NA

Sequences

>g7074.t13 Gene=g7074 Length=850
ATGAGTTTGTATAACTTCAAGAAGATAATGTCCTTTATCGATATTATGCTGTCGAGAACC
CAGCGAAAGACACCAACAGTCGTTCATAAGCACTACAAAATATCAAGAATTCGTGCATTC
TATATGAGAAAAGTGAAATATACACAACAAAATTTTCATGATCGTTTGTCACAAATAATT
CAAGATTTTCCAAAACTGGATGATATCCATCCATTTTATGCAGATTTGATAAATGTTCTC
TTTGAAAAAGATCATTATAAACTTGCTCTTGGTCAATTAAATATGGCTCGTCATTTAATT
GATAATGTTGCAAAAGAATATGTTCGTTTATTAAAGTATGGTGATTCACTATATCGTTGT
AAACAATTGAAAAAGGCTGCATTAGGTAGAATGGCAACAATCATCAAACGTCAGAAAGAC
AATTTAGCTTATCTTGAAACAGTTCGTCAACATCTTTCGCGTTTGCCTACAATTGATCCT
TATACAAGAACAATAATTTTAACAGGATTTCCTAATGTTGGTAAATCAAGTTTCATGAAT
AAAATCACACGTGCGGAAGTCGAAGTTCAACCATATGCTTTCACAACAAAAAGTCTTTTT
GTTGGACATACAGACTATAAATATTTACGTTGGCAAGTAATTGATACACCAGGACTTTTG
GATCGTTCATTAGAAGATCGAAATGTCATTGAAATGCAAGCTATCACTGCACTAGCTCAT
CTTCGTGCATGTGTTTTATATATAATGGATATTTCAGAAAACTGTGGTCATACACTTGAA
GAGCAAGTGCATCTTTATGAATCAATTAAACCGCTTTTTGCAAATAAACCACTTATGATT
GTCATCAATA

>g7074.t13 Gene=g7074 Length=283
MSLYNFKKIMSFIDIMLSRTQRKTPTVVHKHYKISRIRAFYMRKVKYTQQNFHDRLSQII
QDFPKLDDIHPFYADLINVLFEKDHYKLALGQLNMARHLIDNVAKEYVRLLKYGDSLYRC
KQLKKAALGRMATIIKRQKDNLAYLETVRQHLSRLPTIDPYTRTIILTGFPNVGKSSFMN
KITRAEVEVQPYAFTTKSLFVGHTDYKYLRWQVIDTPGLLDRSLEDRNVIEMQAITALAH
LRACVLYIMDISENCGHTLEEQVHLYESIKPLFANKPLMIVIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g7074.t13 CDD cd01897 NOG 163 283 0.000
10 g7074.t13 Gene3D G3DSA:1.20.120.1190 - 3 155 0.000
9 g7074.t13 Gene3D G3DSA:3.40.50.300 - 156 283 0.000
3 g7074.t13 PANTHER PTHR45759 NUCLEOLAR GTP-BINDING PROTEIN 1 1 283 0.000
4 g7074.t13 PANTHER PTHR45759:SF1 NUCLEOLAR GTP-BINDING PROTEIN 1 1 283 0.000
7 g7074.t13 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 165 185 0.000
6 g7074.t13 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 186 204 0.000
5 g7074.t13 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 213 228 0.000
1 g7074.t13 Pfam PF17835 NOG1 N-terminal helical domain 11 159 0.000
2 g7074.t13 Pfam PF06858 Nucleolar GTP-binding protein 1 (NOG1) 230 283 0.000
11 g7074.t13 ProSiteProfiles PS51710 OBG-type guanine nucleotide-binding (G) domain profile. 163 283 33.314
8 g7074.t13 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 42 283 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005525 GTP binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed