General information for g7080.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Steroidogenic acute regulatory protein-like.
Parent gene
- The parent gene g7080 is located on chr_2: 21071562..21073193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7080 | g7080.t1 | TTS | g7080.t1 | 21069018 | 21069018 |
| chr_2 | g7080 | g7080.t1 | isoform | g7080.t1 | 21069182 | 21072051 |
| chr_2 | g7080 | g7080.t1 | exon | g7080.t1.exon1 | 21069182 | 21069224 |
| chr_2 | g7080 | g7080.t1 | cds | g7080.t1.CDS1 | 21069182 | 21069224 |
| chr_2 | g7080 | g7080.t1 | exon | g7080.t1.exon2 | 21069288 | 21069949 |
| chr_2 | g7080 | g7080.t1 | cds | g7080.t1.CDS2 | 21069288 | 21069949 |
| chr_2 | g7080 | g7080.t1 | exon | g7080.t1.exon3 | 21070012 | 21070266 |
| chr_2 | g7080 | g7080.t1 | cds | g7080.t1.CDS3 | 21070012 | 21070266 |
| chr_2 | g7080 | g7080.t1 | exon | g7080.t1.exon4 | 21071237 | 21071373 |
| chr_2 | g7080 | g7080.t1 | cds | g7080.t1.CDS4 | 21071237 | 21071373 |
| chr_2 | g7080 | g7080.t1 | exon | g7080.t1.exon5 | 21071435 | 21071935 |
| chr_2 | g7080 | g7080.t1 | cds | g7080.t1.CDS5 | 21071435 | 21071935 |
| chr_2 | g7080 | g7080.t1 | exon | g7080.t1.exon6 | 21072003 | 21072051 |
| chr_2 | g7080 | g7080.t1 | cds | g7080.t1.CDS6 | 21072003 | 21072051 |
| chr_2 | g7080 | g7080.t1 | TSS | g7080.t1 | 21072512 | 21072512 |
Sequences
>g7080.t1 Gene=g7080 Length=1647
ATGGAAACGAGAAGTCTTAGAAGTGCCAATATCAATTTTCACAATTATGGTTCAACACAA
ACTCAACCAATAAATTTTTATTCTGAAGATTTTATAGCTGGATTTACTGGGAGTGCTAAT
CAAATTTCTCCTGTTCGTCGATTTTTCTGCCTATTTGTCACATTTGATCTCGTATTTGTT
GGACTGCTCTGGTTAATTTGTGTAGTTATCACTGGCGAAAATGTTTATAAAGCACTTCAG
GAACAAATACTAAACTATAATATTGAGACTTCTCTTTTCGATGTAGTCATTGCTGCTGGA
ATACGGTTCATAGTTCTGATATTCTTTTATGGAATTTGTAAAATCAACCATTGGTTTATT
ATTGCACTCACGACAACTCTCTCATGTGGATTCCTCATCGGAAAAGTTTTTTATTTCATA
TGGCCCTCTCAACAACCTGTGTTTCAAGTATTACTTATAATTATTTCATTTGTGATTTCT
TGGTTTGAAGCCTGGTTCTTAGATTCGCGTGTTTTTCCACAAGAACAATATTCCCGAACA
TTAACTAGTGTTTTGAGTACATCAGCTGACTCACGAACAACTCTACTTCCGCAGTATTTT
AATACTTTTGGTGTTGGCCGTGGTAGTGTTATACAAGGAACTGAAAGCATTCGGAATTTT
TATTCACCTGTAGAGAGCGATGATGAGGATGAAGAGTTTAAGCATTTAGGCTATGAAACA
GTTCAAAAAGCATTTGATTTACTTGAATCTACTGACTGGAAAGTGGAAAAGGTCACATCA
TGTAATGACACAATTTCAACATGCTCACGTCCAATTGGAAAAGTATATAAATTATCAGGC
AAAGTAAATTATTCACCAAAGAAATTGCTTCAAGAACTCTTTTATAATATTGAGAATATT
CCAACATGGAACCCAACACTTTTAGAAAATCGGATTATTCGAAAAATAGATAGCTGTACT
GATATTGCATATTCAGTTAGTGCTAGTGGTGGTGGTGGAATAGTGAAAAGTCGTGATTTT
GTTAATCTTCGTTGTTGGAAGTTGATCAAAGATTCTCGCATAGTTGAAAACTACAATATC
AATTCATCTTTAGATAAACTTTCTATCAAGACTCATTCATCTGATGGTGATAACGAAAAC
TCAGAAGATGACGAAGAAAAGAAAGATATTACAGAAGTTAAGAAAAGTAAAAAGAAAGTC
GTGAAATCATCCCATGAGAAACCTTTAAAGAAATCAGCAAGTGATAATGAGATAAACGAG
AGTAATGCTGATAATAATAGTTTTGAAACAAAAGAACAATTGAGTAAAAGTCTTGGAGCT
AATACAGTAACAACTGATGTTAGGTGCACGAGTGATGATGATGATGAATCCTTTTCAGAT
GCCCAAGACATAAAAACTGAACCAACAATTGTAAAGAATCTACAAAACTATGTGTTCGTT
AGTGCTGCAATCAGCATAGAATATCCACTATTTCCACCCAATTCAAAATACATTCGTGGA
GACAATATTATAAGTTGTTGGGCTATGCGACACATTCCAAATGAATCCGATTCTTGTATA
TTTGAATGGCTATTGTGCATTGATTTGAAAGGAAGTTTGCCGAAGGTTCAAGAACTTAAT
GAAGAAAACAACACTCAGAGTGCCTAA
>g7080.t1 Gene=g7080 Length=548
METRSLRSANINFHNYGSTQTQPINFYSEDFIAGFTGSANQISPVRRFFCLFVTFDLVFV
GLLWLICVVITGENVYKALQEQILNYNIETSLFDVVIAAGIRFIVLIFFYGICKINHWFI
IALTTTLSCGFLIGKVFYFIWPSQQPVFQVLLIIISFVISWFEAWFLDSRVFPQEQYSRT
LTSVLSTSADSRTTLLPQYFNTFGVGRGSVIQGTESIRNFYSPVESDDEDEEFKHLGYET
VQKAFDLLESTDWKVEKVTSCNDTISTCSRPIGKVYKLSGKVNYSPKKLLQELFYNIENI
PTWNPTLLENRIIRKIDSCTDIAYSVSASGGGGIVKSRDFVNLRCWKLIKDSRIVENYNI
NSSLDKLSIKTHSSDGDNENSEDDEEKKDITEVKKSKKKVVKSSHEKPLKKSASDNEINE
SNADNNSFETKEQLSKSLGANTVTTDVRCTSDDDDESFSDAQDIKTEPTIVKNLQNYVFV
SAAISIEYPLFPPNSKYIRGDNIISCWAMRHIPNESDSCIFEWLLCIDLKGSLPKVQELN
EENNTQSA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g7080.t1 | Gene3D | G3DSA:3.30.530.20 | - | 214 | 366 | 7.0E-38 |
| 11 | g7080.t1 | Gene3D | G3DSA:3.30.530.20 | - | 463 | 537 | 4.5E-18 |
| 26 | g7080.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 435 | - |
| 27 | g7080.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 435 | - |
| 4 | g7080.t1 | PANTHER | PTHR46121:SF4 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE | 25 | 535 | 5.6E-141 |
| 5 | g7080.t1 | PANTHER | PTHR46121 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE | 25 | 535 | 5.6E-141 |
| 6 | g7080.t1 | PRINTS | PR00978 | Steroidogenic acute regulatory protein signature | 289 | 308 | 4.1E-5 |
| 8 | g7080.t1 | PRINTS | PR00978 | Steroidogenic acute regulatory protein signature | 308 | 325 | 4.1E-5 |
| 7 | g7080.t1 | PRINTS | PR00978 | Steroidogenic acute regulatory protein signature | 325 | 345 | 4.1E-5 |
| 1 | g7080.t1 | Pfam | PF10457 | Cholesterol-capturing domain | 43 | 226 | 1.8E-62 |
| 3 | g7080.t1 | Pfam | PF01852 | START domain | 270 | 352 | 1.7E-10 |
| 2 | g7080.t1 | Pfam | PF01852 | START domain | 476 | 535 | 5.5E-6 |
| 15 | g7080.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 47 | - |
| 20 | g7080.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 48 | 72 | - |
| 16 | g7080.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 73 | 91 | - |
| 21 | g7080.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 92 | 112 | - |
| 13 | g7080.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 113 | 118 | - |
| 19 | g7080.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 119 | 141 | - |
| 17 | g7080.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 142 | 146 | - |
| 18 | g7080.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 147 | 167 | - |
| 14 | g7080.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 168 | 548 | - |
| 29 | g7080.t1 | ProSiteProfiles | PS51439 | MENTAL domain profile. | 42 | 216 | 31.737 |
| 28 | g7080.t1 | ProSiteProfiles | PS50848 | START domain profile. | 249 | 548 | 24.162 |
| 9 | g7080.t1 | SUPERFAMILY | SSF55961 | Bet v1-like | 232 | 361 | 4.67E-20 |
| 10 | g7080.t1 | SUPERFAMILY | SSF55961 | Bet v1-like | 466 | 536 | 6.73E-12 |
| 24 | g7080.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 48 | 70 | - |
| 25 | g7080.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 90 | 112 | - |
| 23 | g7080.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 119 | 141 | - |
| 22 | g7080.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 145 | 167 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008289 | lipid binding | MF |
KEGG
Orthology
- This transcript has been annotated with K22291 (StAR-related lipid transfer protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
