General information for g7080.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Steroidogenic acute regulatory protein-like.
Parent gene
- The parent gene g7080 is located on chr_2: 21071562..21073193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7080 | g7080.t12 | TTS | g7080.t12 | 21069710 | 21069710 |
| chr_2 | g7080 | g7080.t12 | isoform | g7080.t12 | 21070014 | 21071104 |
| chr_2 | g7080 | g7080.t12 | exon | g7080.t12.exon1 | 21070014 | 21070266 |
| chr_2 | g7080 | g7080.t12 | cds | g7080.t12.CDS1 | 21070015 | 21070266 |
| chr_2 | g7080 | g7080.t12 | exon | g7080.t12.exon2 | 21070538 | 21071104 |
| chr_2 | g7080 | g7080.t12 | cds | g7080.t12.CDS2 | 21070538 | 21070618 |
| chr_2 | g7080 | g7080.t12 | TSS | g7080.t12 | 21071123 | 21071123 |
Sequences
>g7080.t12 Gene=g7080 Length=820
GTGAGTTCAAACGACTTTTAATTTAAGCTTTTTATAATGCAATTGTTGATAAAAACTGAT
GTAAGACATTTTTGTTGTTGTATATTTAATTTAATAATACTGGTCATATTTTGTGTTTAG
TATAATTAATTCTGATTAATTGATAACACAAAGTCTACATTTACAAGTACAAAGAACTTT
TTATTGATGAAGGTCGGTACATAAGACAAATTATCTTATCATTGAAAGACAATCATAGGA
AATTCTTCTTACGCAATAAAACAGAATTAATTTAATAATTCTCACACATATTAAAAGATT
ATCTCAACAATTGCGACGACAATTTATTTCTTCATGCGTAAAATAAGATTTATTCAAATT
ATTCAGTATTGAGTGTTTGACTTATTCATATCGTACGAAGAAAAAGTGAAATATTTGAAT
TGATCTAAGTTATCTTCTATAAAATTTAACAAACTTCATTGAAATATAAATTTTGATTTG
TTCATGATGAATTTTTTCAAGAAAAAATTTTCATTCTTTCGACGTTCATCAAGTCAGAAG
TTTATTAATATTGACCATGTATCTACGGATGAAGAGTTTAAGCATTTAGGCTATGAAACA
GTTCAAAAAGCATTTGATTTACTTGAATCTACTGACTGGAAAGTGGAAAAGGTCACATCA
TGTAATGACACAATTTCAACATGCTCACGTCCAATTGGAAAAGTATATAAATTATCAGGC
AAAGTAAATTATTCACCAAAGAAATTGCTTCAAGAACTCTTTTATAATATTGAGAATATT
CCAACATGGAACCCAACACTTTTAGAAAATCGGATTATTC
>g7080.t12 Gene=g7080 Length=111
MNFFKKKFSFFRRSSSQKFINIDHVSTDEEFKHLGYETVQKAFDLLESTDWKVEKVTSCN
DTISTCSRPIGKVYKLSGKVNYSPKKLLQELFYNIENIPTWNPTLLENRII
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7080.t12 | Gene3D | G3DSA:3.30.530.20 | - | 12 | 111 | 0 |
| 1 | g7080.t12 | PANTHER | PTHR46121:SF4 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE | 21 | 111 | 0 |
| 2 | g7080.t12 | PANTHER | PTHR46121 | STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE | 21 | 111 | 0 |
| 3 | g7080.t12 | SUPERFAMILY | SSF55961 | Bet v1-like | 31 | 111 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
