Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Steroidogenic acute regulatory protein-like.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7080 g7080.t4 TTS g7080.t4 21069018 21069018
chr_2 g7080 g7080.t4 isoform g7080.t4 21069182 21070744
chr_2 g7080 g7080.t4 exon g7080.t4.exon1 21069182 21069949
chr_2 g7080 g7080.t4 cds g7080.t4.CDS1 21069182 21069949
chr_2 g7080 g7080.t4 exon g7080.t4.exon2 21070012 21070266
chr_2 g7080 g7080.t4 cds g7080.t4.CDS2 21070012 21070266
chr_2 g7080 g7080.t4 exon g7080.t4.exon3 21070538 21070744
chr_2 g7080 g7080.t4 cds g7080.t4.CDS3 21070538 21070618
chr_2 g7080 g7080.t4 TSS g7080.t4 21071123 21071123

Sequences

>g7080.t4 Gene=g7080 Length=1230
ATTCAGTATTGAGTGTTTGACTTATTCATATCGTACGAAGAAAAAGTGAAATATTTGAAT
TGATCTAAGTTATCTTCTATAAAATTTAACAAACTTCATTGAAATATAAATTTTGATTTG
TTCATGATGAATTTTTTCAAGAAAAAATTTTCATTCTTTCGACGTTCATCAAGTCAGAAG
TTTATTAATATTGACCATGTATCTACGGATGAAGAGTTTAAGCATTTAGGCTATGAAACA
GTTCAAAAAGCATTTGATTTACTTGAATCTACTGACTGGAAAGTGGAAAAGGTCACATCA
TGTAATGACACAATTTCAACATGCTCACGTCCAATTGGAAAAGTATATAAATTATCAGGC
AAAGTAAATTATTCACCAAAGAAATTGCTTCAAGAACTCTTTTATAATATTGAGAATATT
CCAACATGGAACCCAACACTTTTAGAAAATCGGATTATTCGAAAAATAGATAGCTGTACT
GATATTGCATATTCAGTTAGTGCTAGTGGTGGTGGTGGAATAGTGAAAAGTCGTGATTTT
GTTAATCTTCGTTGTTGGAAGTTGATCAAAGATTCTCGCATAGTTGAAAACTACAATATC
AATTCATCTTTAGATAAACTTTCTATCAAGACTCATTCATCTGATGGTGATAACGAAAAC
TCAGAAGATGACGAAGAAAAGAAAGATATTACAGAAGTTAAGAAAAGTAAAAAGAAAGTC
GTGAAATCATCCCATGAGAAACCTTTAAAGAAATCAGCAAGTGATAATGAGATAAACGAG
AGTAATGCTGATAATAATAGTTTTGAAACAAAAGAACAATTGAGTAAAAGTCTTGGAGCT
AATACAGTAACAACTGATGTTAGGTGCACGAGTGATGATGATGATGAATCCTTTTCAGAT
GCCCAAGACATAAAAACTGAACCAACAATTGTAAAGAATCTACAAAACTATGTGTTCGTT
AGTGCTGCAATCAGCATAGAATATCCACTATTTCCACCCAATTCAAAATACATTCGTGGA
GACAATATTATAAGTTGTTGGGCTATGCGACACATTCCAAATGAATCCGATTCTTGTATA
TTTGAATGGCTATTGTGCATTGATTTGAAAGGAAGTTTGCCGAAGTATATTTTAAATACT
GCCTTTGTCTCATTAATGACTGATTATATGATACATCTTCGAAATAGGGTTCAAGAACTT
AATGAAGAAAACAACACTCAGAGTGCCTAA

>g7080.t4 Gene=g7080 Length=367
MNFFKKKFSFFRRSSSQKFINIDHVSTDEEFKHLGYETVQKAFDLLESTDWKVEKVTSCN
DTISTCSRPIGKVYKLSGKVNYSPKKLLQELFYNIENIPTWNPTLLENRIIRKIDSCTDI
AYSVSASGGGGIVKSRDFVNLRCWKLIKDSRIVENYNINSSLDKLSIKTHSSDGDNENSE
DDEEKKDITEVKKSKKKVVKSSHEKPLKKSASDNEINESNADNNSFETKEQLSKSLGANT
VTTDVRCTSDDDDESFSDAQDIKTEPTIVKNLQNYVFVSAAISIEYPLFPPNSKYIRGDN
IISCWAMRHIPNESDSCIFEWLLCIDLKGSLPKYILNTAFVSLMTDYMIHLRNRVQELNE
ENNTQSA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g7080.t4 Gene3D G3DSA:3.30.530.20 - 12 165 4.0E-38
13 g7080.t4 Gene3D G3DSA:3.30.530.20 - 244 361 8.9E-28
11 g7080.t4 MobiDBLite mobidb-lite consensus disorder prediction 169 233 -
10 g7080.t4 MobiDBLite mobidb-lite consensus disorder prediction 213 233 -
3 g7080.t4 PANTHER PTHR46121:SF4 STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE 22 362 3.8E-78
4 g7080.t4 PANTHER PTHR46121 STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE 22 362 3.8E-78
5 g7080.t4 PRINTS PR00978 Steroidogenic acute regulatory protein signature 87 106 1.5E-5
7 g7080.t4 PRINTS PR00978 Steroidogenic acute regulatory protein signature 106 123 1.5E-5
6 g7080.t4 PRINTS PR00978 Steroidogenic acute regulatory protein signature 123 143 1.5E-5
1 g7080.t4 Pfam PF01852 START domain 65 150 8.3E-11
2 g7080.t4 Pfam PF01852 START domain 274 360 6.8E-10
14 g7080.t4 ProSiteProfiles PS50848 START domain profile. 47 360 28.573
8 g7080.t4 SUPERFAMILY SSF55961 Bet v1-like 31 159 2.01E-20
9 g7080.t4 SUPERFAMILY SSF55961 Bet v1-like 275 359 9.16E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008289 lipid binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed