Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Steroidogenic acute regulatory protein-like.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7080 g7080.t5 TTS g7080.t5 21069018 21069018
chr_2 g7080 g7080.t5 isoform g7080.t5 21069182 21071104
chr_2 g7080 g7080.t5 exon g7080.t5.exon1 21069182 21069949
chr_2 g7080 g7080.t5 cds g7080.t5.CDS1 21069182 21069949
chr_2 g7080 g7080.t5 exon g7080.t5.exon2 21070012 21070266
chr_2 g7080 g7080.t5 cds g7080.t5.CDS2 21070012 21070266
chr_2 g7080 g7080.t5 exon g7080.t5.exon3 21071045 21071104
chr_2 g7080 g7080.t5 cds g7080.t5.CDS3 21071045 21071068
chr_2 g7080 g7080.t5 TSS g7080.t5 21071123 21071123

Sequences

>g7080.t5 Gene=g7080 Length=1083
GTGAGTTCAAACGACTTTTAATTTAAGCTTTTTATAATGCAATTGTTGATAAAAACTGAT
GATGAAGAGTTTAAGCATTTAGGCTATGAAACAGTTCAAAAAGCATTTGATTTACTTGAA
TCTACTGACTGGAAAGTGGAAAAGGTCACATCATGTAATGACACAATTTCAACATGCTCA
CGTCCAATTGGAAAAGTATATAAATTATCAGGCAAAGTAAATTATTCACCAAAGAAATTG
CTTCAAGAACTCTTTTATAATATTGAGAATATTCCAACATGGAACCCAACACTTTTAGAA
AATCGGATTATTCGAAAAATAGATAGCTGTACTGATATTGCATATTCAGTTAGTGCTAGT
GGTGGTGGTGGAATAGTGAAAAGTCGTGATTTTGTTAATCTTCGTTGTTGGAAGTTGATC
AAAGATTCTCGCATAGTTGAAAACTACAATATCAATTCATCTTTAGATAAACTTTCTATC
AAGACTCATTCATCTGATGGTGATAACGAAAACTCAGAAGATGACGAAGAAAAGAAAGAT
ATTACAGAAGTTAAGAAAAGTAAAAAGAAAGTCGTGAAATCATCCCATGAGAAACCTTTA
AAGAAATCAGCAAGTGATAATGAGATAAACGAGAGTAATGCTGATAATAATAGTTTTGAA
ACAAAAGAACAATTGAGTAAAAGTCTTGGAGCTAATACAGTAACAACTGATGTTAGGTGC
ACGAGTGATGATGATGATGAATCCTTTTCAGATGCCCAAGACATAAAAACTGAACCAACA
ATTGTAAAGAATCTACAAAACTATGTGTTCGTTAGTGCTGCAATCAGCATAGAATATCCA
CTATTTCCACCCAATTCAAAATACATTCGTGGAGACAATATTATAAGTTGTTGGGCTATG
CGACACATTCCAAATGAATCCGATTCTTGTATATTTGAATGGCTATTGTGCATTGATTTG
AAAGGAAGTTTGCCGAAGTATATTTTAAATACTGCCTTTGTCTCATTAATGACTGATTAT
ATGATACATCTTCGAAATAGGGTTCAAGAACTTAATGAAGAAAACAACACTCAGAGTGCC
TAA

>g7080.t5 Gene=g7080 Length=348
MQLLIKTDDEEFKHLGYETVQKAFDLLESTDWKVEKVTSCNDTISTCSRPIGKVYKLSGK
VNYSPKKLLQELFYNIENIPTWNPTLLENRIIRKIDSCTDIAYSVSASGGGGIVKSRDFV
NLRCWKLIKDSRIVENYNINSSLDKLSIKTHSSDGDNENSEDDEEKKDITEVKKSKKKVV
KSSHEKPLKKSASDNEINESNADNNSFETKEQLSKSLGANTVTTDVRCTSDDDDESFSDA
QDIKTEPTIVKNLQNYVFVSAAISIEYPLFPPNSKYIRGDNIISCWAMRHIPNESDSCIF
EWLLCIDLKGSLPKYILNTAFVSLMTDYMIHLRNRVQELNEENNTQSA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7080.t5 Gene3D G3DSA:3.30.530.20 - 2 146 4.1E-38
12 g7080.t5 Gene3D G3DSA:3.30.530.20 - 224 342 7.9E-28
11 g7080.t5 MobiDBLite mobidb-lite consensus disorder prediction 150 214 -
10 g7080.t5 MobiDBLite mobidb-lite consensus disorder prediction 194 214 -
3 g7080.t5 PANTHER PTHR46121:SF4 STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE 6 343 4.5E-78
4 g7080.t5 PANTHER PTHR46121 STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE 6 343 4.5E-78
7 g7080.t5 PRINTS PR00978 Steroidogenic acute regulatory protein signature 68 87 1.3E-5
6 g7080.t5 PRINTS PR00978 Steroidogenic acute regulatory protein signature 87 104 1.3E-5
5 g7080.t5 PRINTS PR00978 Steroidogenic acute regulatory protein signature 104 124 1.3E-5
1 g7080.t5 Pfam PF01852 START domain 46 131 7.5E-11
2 g7080.t5 Pfam PF01852 START domain 255 341 6.2E-10
14 g7080.t5 ProSiteProfiles PS50848 START domain profile. 28 341 28.573
9 g7080.t5 SUPERFAMILY SSF55961 Bet v1-like 11 140 1.56E-20
8 g7080.t5 SUPERFAMILY SSF55961 Bet v1-like 256 340 8.61E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008289 lipid binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values