Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Steroidogenic acute regulatory protein-like.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7080 g7080.t6 TTS g7080.t6 21069018 21069018
chr_2 g7080 g7080.t6 isoform g7080.t6 21069182 21071104
chr_2 g7080 g7080.t6 exon g7080.t6.exon1 21069182 21069949
chr_2 g7080 g7080.t6 cds g7080.t6.CDS1 21069182 21069949
chr_2 g7080 g7080.t6 exon g7080.t6.exon2 21070012 21070266
chr_2 g7080 g7080.t6 cds g7080.t6.CDS2 21070012 21070266
chr_2 g7080 g7080.t6 exon g7080.t6.exon3 21070913 21071104
chr_2 g7080 g7080.t6 cds g7080.t6.CDS3 21070913 21070918
chr_2 g7080 g7080.t6 TSS g7080.t6 21071123 21071123

Sequences

>g7080.t6 Gene=g7080 Length=1215
GTGAGTTCAAACGACTTTTAATTTAAGCTTTTTATAATGCAATTGTTGATAAAAACTGAT
GTAAGACATTTTTGTTGTTGTATATTTAATTTAATAATACTGGTCATATTTTGTGTTTAG
TATAATTAATTCTGATTAATTGATAACACAAAGTCTACATTTACAAGTACAAAGAACTTT
TTATTGATGAAGGATGAAGAGTTTAAGCATTTAGGCTATGAAACAGTTCAAAAAGCATTT
GATTTACTTGAATCTACTGACTGGAAAGTGGAAAAGGTCACATCATGTAATGACACAATT
TCAACATGCTCACGTCCAATTGGAAAAGTATATAAATTATCAGGCAAAGTAAATTATTCA
CCAAAGAAATTGCTTCAAGAACTCTTTTATAATATTGAGAATATTCCAACATGGAACCCA
ACACTTTTAGAAAATCGGATTATTCGAAAAATAGATAGCTGTACTGATATTGCATATTCA
GTTAGTGCTAGTGGTGGTGGTGGAATAGTGAAAAGTCGTGATTTTGTTAATCTTCGTTGT
TGGAAGTTGATCAAAGATTCTCGCATAGTTGAAAACTACAATATCAATTCATCTTTAGAT
AAACTTTCTATCAAGACTCATTCATCTGATGGTGATAACGAAAACTCAGAAGATGACGAA
GAAAAGAAAGATATTACAGAAGTTAAGAAAAGTAAAAAGAAAGTCGTGAAATCATCCCAT
GAGAAACCTTTAAAGAAATCAGCAAGTGATAATGAGATAAACGAGAGTAATGCTGATAAT
AATAGTTTTGAAACAAAAGAACAATTGAGTAAAAGTCTTGGAGCTAATACAGTAACAACT
GATGTTAGGTGCACGAGTGATGATGATGATGAATCCTTTTCAGATGCCCAAGACATAAAA
ACTGAACCAACAATTGTAAAGAATCTACAAAACTATGTGTTCGTTAGTGCTGCAATCAGC
ATAGAATATCCACTATTTCCACCCAATTCAAAATACATTCGTGGAGACAATATTATAAGT
TGTTGGGCTATGCGACACATTCCAAATGAATCCGATTCTTGTATATTTGAATGGCTATTG
TGCATTGATTTGAAAGGAAGTTTGCCGAAGTATATTTTAAATACTGCCTTTGTCTCATTA
ATGACTGATTATATGATACATCTTCGAAATAGGGTTCAAGAACTTAATGAAGAAAACAAC
ACTCAGAGTGCCTAA

>g7080.t6 Gene=g7080 Length=342
MKDEEFKHLGYETVQKAFDLLESTDWKVEKVTSCNDTISTCSRPIGKVYKLSGKVNYSPK
KLLQELFYNIENIPTWNPTLLENRIIRKIDSCTDIAYSVSASGGGGIVKSRDFVNLRCWK
LIKDSRIVENYNINSSLDKLSIKTHSSDGDNENSEDDEEKKDITEVKKSKKKVVKSSHEK
PLKKSASDNEINESNADNNSFETKEQLSKSLGANTVTTDVRCTSDDDDESFSDAQDIKTE
PTIVKNLQNYVFVSAAISIEYPLFPPNSKYIRGDNIISCWAMRHIPNESDSCIFEWLLCI
DLKGSLPKYILNTAFVSLMTDYMIHLRNRVQELNEENNTQSA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g7080.t6 Gene3D G3DSA:3.30.530.20 - 1 140 1.3E-37
12 g7080.t6 Gene3D G3DSA:3.30.530.20 - 218 336 7.7E-28
11 g7080.t6 MobiDBLite mobidb-lite consensus disorder prediction 144 208 -
10 g7080.t6 MobiDBLite mobidb-lite consensus disorder prediction 188 208 -
3 g7080.t6 PANTHER PTHR46121:SF4 STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE 2 337 1.2E-77
4 g7080.t6 PANTHER PTHR46121 STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE 2 337 1.2E-77
7 g7080.t6 PRINTS PR00978 Steroidogenic acute regulatory protein signature 62 81 1.2E-5
5 g7080.t6 PRINTS PR00978 Steroidogenic acute regulatory protein signature 81 98 1.2E-5
6 g7080.t6 PRINTS PR00978 Steroidogenic acute regulatory protein signature 98 118 1.2E-5
1 g7080.t6 Pfam PF01852 START domain 40 125 7.3E-11
2 g7080.t6 Pfam PF01852 START domain 249 335 6.0E-10
14 g7080.t6 ProSiteProfiles PS50848 START domain profile. 22 335 28.573
8 g7080.t6 SUPERFAMILY SSF55961 Bet v1-like 6 134 1.83E-20
9 g7080.t6 SUPERFAMILY SSF55961 Bet v1-like 250 334 8.33E-18

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008289 lipid binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values