Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative DNA-binding protein D-ETS-4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7081 g7081.t1 TSS g7081.t1 21073545 21073545
chr_2 g7081 g7081.t1 isoform g7081.t1 21074062 21080305
chr_2 g7081 g7081.t1 exon g7081.t1.exon1 21074062 21074091
chr_2 g7081 g7081.t1 cds g7081.t1.CDS1 21074062 21074091
chr_2 g7081 g7081.t1 exon g7081.t1.exon2 21078494 21079396
chr_2 g7081 g7081.t1 cds g7081.t1.CDS2 21078494 21079396
chr_2 g7081 g7081.t1 exon g7081.t1.exon3 21079495 21079696
chr_2 g7081 g7081.t1 cds g7081.t1.CDS3 21079495 21079696
chr_2 g7081 g7081.t1 exon g7081.t1.exon4 21079830 21080305
chr_2 g7081 g7081.t1 cds g7081.t1.CDS4 21079830 21080305
chr_2 g7081 g7081.t1 TTS g7081.t1 NA NA

Sequences

>g7081.t1 Gene=g7081 Length=1611
ATGTTCTCATCATCAGCATTCAAAGAGACGTCACAGAGCAGCTTTTATCAACAACAAACA
ATTTACGATTTAAACACTCTGCTGAGCGAATCATCTACAGCAACGTATGGCGTTGATAAC
TTTGATTTGTCGCTATTAGGAAACGATTATCAGTTCGATAGTTATCAACAATTGAAGCTT
GATGATGCATTGTCTATTGAAATTGATAGCAACTATCAATATCCATCACAATTGACACAA
TTGAAACAAGAAGATTTGAATGATTGGCCATCATCACAGCAACAACAGCAATATTATTCA
CAATTGATTTCACCAATCAGTCCTGCAACAACAACTTACAGTTCGCCTTCTCCTTGTCCA
TCAATTGAACAACATTTTACTGTTATAAAGCAAGAACAACAAATTGTGCTGCCTCCATCA
CCACCTGATTCAAACGGCGTTCCTTCACCTCAAAGTATACATCATTGTGAGAATTTCAAA
GTGGAGCAATTTGATGAATCAGTGTTGAGCCCCTCGGCTGGCGAAAATTTTATTGATATC
AATTACTTGCTTGATTCTTCTGATAAGAAACCACAACAAGATCATCAAGTTTTACGTGGT
TTCTTGCAAGATACAACATTTCAACGTAAGCACAATCTTAAACCATTACCATTGGAAAAT
TTATTTGGCGGTTTGACACAACGTGGCGACATTGAGCCAGTTATTTCACTCGCCCTCCAG
CATGCTAAGCAGGAGGTGCAAGCAACATGCAATGCATTGAAAATCTCACCAAATCCTCTT
GAATGGACAGAACAACAAGTTCAACTTTGGATCAATTCGACCGTCAAACAGTTCAAATTA
GAAGCAATTCCCAAATGTGAGACAATTTTCCCAGAAAACGGTCAAATGCTTGCCATGCTT
AGTGATGAGGATTTTATACGACGCGCACCACAGATCGGTAGTATTTTGCATGCTCAGTTG
GAAATATGGAAGGCAGCGTACGTTGACGTATCGAATAATAGTAACAGCGGTGATAATAAT
AGCACTACATTAACGTCATCGGGTTCCTCAGCTGTTCCAACAATGAACTCGGCTTCCTTA
TCACAGACGTCAATTTGGAACCAGATGTTGAACGACGACAGTGACATGAGCGATGATGAT
GATTCAGATGTTGGTATGGAAATAGACTTACAAACATCATCACCAGCAGCAGTTTCAGCA
TCAGTGGCGACAGTTGATGGATGTGAAGGTGGAGAGAGTTCAGCATCAAGTGCACAACCT
ACAACAACCAAAACAACAAAAACTCCAAAAAAGCATCACACACATTTGCAAAAGAAAGGC
AGTGGTGCGCAATCATCCCACATACATTTGTGGCAATTTTTAAAAGAGTTGCTTGCTTCA
CCACAACTACATGGCACTGCTATTCGTTGGTTAGATCGCAGTAAAGGTATTTTCAAGATC
GAGGATTCAGTTCGAGTTGCTCGACTATGGGGCACAAGAAAGAATCGTCCAGCAATGAAC
TATGATAAACTTTCACGCTCGATTCGCCAATATTACAAAAAAGGTATCATGAAGAAAACA
GAGCGTTCACAACGCTTAGTTTACCAATTTTGCCATCCATACAGTTTGTAA

>g7081.t1 Gene=g7081 Length=536
MFSSSAFKETSQSSFYQQQTIYDLNTLLSESSTATYGVDNFDLSLLGNDYQFDSYQQLKL
DDALSIEIDSNYQYPSQLTQLKQEDLNDWPSSQQQQQYYSQLISPISPATTTYSSPSPCP
SIEQHFTVIKQEQQIVLPPSPPDSNGVPSPQSIHHCENFKVEQFDESVLSPSAGENFIDI
NYLLDSSDKKPQQDHQVLRGFLQDTTFQRKHNLKPLPLENLFGGLTQRGDIEPVISLALQ
HAKQEVQATCNALKISPNPLEWTEQQVQLWINSTVKQFKLEAIPKCETIFPENGQMLAML
SDEDFIRRAPQIGSILHAQLEIWKAAYVDVSNNSNSGDNNSTTLTSSGSSAVPTMNSASL
SQTSIWNQMLNDDSDMSDDDDSDVGMEIDLQTSSPAAVSASVATVDGCEGGESSASSAQP
TTTKTTKTPKKHHTHLQKKGSGAQSSHIHLWQFLKELLASPQLHGTAIRWLDRSKGIFKI
EDSVRVARLWGTRKNRPAMNYDKLSRSIRQYYKKGIMKKTERSQRLVYQFCHPYSL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g7081.t1 Gene3D G3DSA:1.10.150.50 Transcription Factor 238 332 8.4E-25
11 g7081.t1 Gene3D G3DSA:1.10.10.10 winged helix repressor DNA binding domain 411 536 4.5E-39
18 g7081.t1 MobiDBLite mobidb-lite consensus disorder prediction 405 443 -
17 g7081.t1 MobiDBLite mobidb-lite consensus disorder prediction 410 425 -
3 g7081.t1 PANTHER PTHR11849 ETS 78 532 1.0E-80
4 g7081.t1 PANTHER PTHR11849:SF182 SAM POINTED DOMAIN-CONTAINING ETS TRANSCRIPTION FACTOR 78 532 1.0E-80
8 g7081.t1 PRINTS PR00454 ETS domain signature 448 461 2.4E-16
5 g7081.t1 PRINTS PR00454 ETS domain signature 474 492 2.4E-16
7 g7081.t1 PRINTS PR00454 ETS domain signature 493 511 2.4E-16
6 g7081.t1 PRINTS PR00454 ETS domain signature 512 530 2.4E-16
1 g7081.t1 Pfam PF02198 Sterile alpha motif (SAM)/Pointed domain 245 325 9.3E-16
2 g7081.t1 Pfam PF00178 Ets-domain 449 531 2.1E-32
13 g7081.t1 ProSitePatterns PS00345 Ets-domain signature 1. 450 458 -
14 g7081.t1 ProSitePatterns PS00346 Ets-domain signature 2. 496 511 -
19 g7081.t1 ProSiteProfiles PS51433 Pointed (PNT) domain profile. 241 327 35.572
20 g7081.t1 ProSiteProfiles PS50061 Ets-domain profile. 448 531 23.588
15 g7081.t1 SMART SM00251 SAM2_3 243 327 4.4E-15
16 g7081.t1 SMART SM00413 etsneu2 447 535 4.3E-51
9 g7081.t1 SUPERFAMILY SSF47769 SAM/Pointed domain 225 328 1.26E-19
10 g7081.t1 SUPERFAMILY SSF46785 Winged helix DNA-binding domain 428 532 2.72E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006355 regulation of transcription, DNA-templated BP
GO:0043565 sequence-specific DNA binding MF
GO:0003700 DNA-binding transcription factor activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed