General information for g7087.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Decaprenyl-diphosphate synthase subunit 2.
Parent gene
- The parent gene g7087 is located on chr_2: 21097677..21099493 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7087 | g7087.t1 | TSS | g7087.t1 | 21095686 | 21095686 |
| chr_2 | g7087 | g7087.t1 | isoform | g7087.t1 | 21095791 | 21097677 |
| chr_2 | g7087 | g7087.t1 | exon | g7087.t1.exon1 | 21095791 | 21096068 |
| chr_2 | g7087 | g7087.t1 | cds | g7087.t1.CDS1 | 21095791 | 21096068 |
| chr_2 | g7087 | g7087.t1 | exon | g7087.t1.exon2 | 21096409 | 21096691 |
| chr_2 | g7087 | g7087.t1 | cds | g7087.t1.CDS2 | 21096409 | 21096691 |
| chr_2 | g7087 | g7087.t1 | exon | g7087.t1.exon3 | 21096773 | 21096834 |
| chr_2 | g7087 | g7087.t1 | cds | g7087.t1.CDS3 | 21096773 | 21096834 |
| chr_2 | g7087 | g7087.t1 | exon | g7087.t1.exon4 | 21096893 | 21096957 |
| chr_2 | g7087 | g7087.t1 | cds | g7087.t1.CDS4 | 21096893 | 21096957 |
| chr_2 | g7087 | g7087.t1 | exon | g7087.t1.exon5 | 21097064 | 21097677 |
| chr_2 | g7087 | g7087.t1 | cds | g7087.t1.CDS5 | 21097064 | 21097677 |
| chr_2 | g7087 | g7087.t1 | TTS | g7087.t1 | 21098333 | 21098333 |
Sequences
>g7087.t1 Gene=g7087 Length=1302
ATGGCTTTAAGGAAATTATTTTCATCTAAAAGTGCAGCTTTATTTTTGCAACAATCTCGT
GGAATTTCAGTATCATCGCGATGTTTTGAGACAGTTGCAACCTCAAAAAGTGAAGCACGT
CCTAACTGGGATCGTTCTGTGGAAGAAGCAATAAAATGTGTAGGATATCAAACACCATAC
TTGACTCTTCGCTATCTAACTAATGATGAGGATGTTCATTGGATGGAACACATGGAAAAA
TTAGAAGGATCTAATCATCCCATGTGTGAGACTGCAAAAATTTTACTTGCACAGGGAAAG
GCGAATGTAAATCAAATGTGGGGTTTGGTTGTTTTATTAGTTTCCAAAATGGCAGGCTAT
CCAACTGATGCTGTATGGCAAGAGTCAGAATTTGACAAGGACACAGGCATTTTAAAAAGT
CAACGAACACTAGCTGAAGCTGTAGAGATTACATCAAGTGCTAATGAAATTCATCGAGAT
GGTATTCTTAACATGCAACATTATCAAGTTAATGGATTACCAACCCAAGATGGCGATAGC
TTATTAGTATTTGGCAACAAGATTGCCATTCTTGGTGCTGATATTCTACTTGGCTACGCA
TCAATTCAATTCTCAAAACTTAGAGCATATCAGGCCAATATCCTATTGACAACAGCTGGT
CGTGATGTTGGAGATTCAAATTTTATTGGTGACCGAGATATTCAAAACAATCCACTACCT
TCAAATCCATTTGAGAAATTAGAAATGCAAAAATTAAATCCGGAGCTATTTGAAGAAGTG
TCCATAGACCAAATCGACAACACTTTGCCTTTTAAATTGCATGATGTCATGGGAACTGCA
GAGCAAGAATGGCGTTTACGTCATACTTTAGCTGGCGGAACACTTTTAGGAAAAAGTTGT
CAAGCAGCATTGATCCTTGCAAAGCATAACGAAGAAAAACAAAAAGAAATTTATTTTATG
GGAAAGCATATGTATTTGGGTTATCGTGCTGCAAAGGACTTGAGTATTTTTAGATCAGAA
GAATTGCCAGCAAATGGAAAATTCTCACTTGTCAGTGCACCTGTTTTATATCACATTGAA
GAAGATCCTTCACTTTATGATGAGATTAAAAAGGGCTTGGATACAATTGAAAATATAGAC
TTTGCTAAAATTCACAAAATTGTGAGAAATGGACCAGGAATGGATAAAACAAAAGAATTG
CTAAACAAAAACAATCTCATTGCATTCACATTGCTTCATAAATTTCCGAAATCTGATTCA
CAAAGAGCTATTGAGAATTTGATTTTGTCATTGGAGCGTTGA
>g7087.t1 Gene=g7087 Length=433
MALRKLFSSKSAALFLQQSRGISVSSRCFETVATSKSEARPNWDRSVEEAIKCVGYQTPY
LTLRYLTNDEDVHWMEHMEKLEGSNHPMCETAKILLAQGKANVNQMWGLVVLLVSKMAGY
PTDAVWQESEFDKDTGILKSQRTLAEAVEITSSANEIHRDGILNMQHYQVNGLPTQDGDS
LLVFGNKIAILGADILLGYASIQFSKLRAYQANILLTTAGRDVGDSNFIGDRDIQNNPLP
SNPFEKLEMQKLNPELFEEVSIDQIDNTLPFKLHDVMGTAEQEWRLRHTLAGGTLLGKSC
QAALILAKHNEEKQKEIYFMGKHMYLGYRAAKDLSIFRSEELPANGKFSLVSAPVLYHIE
EDPSLYDEIKKGLDTIENIDFAKIHKIVRNGPGMDKTKELLNKNNLIAFTLLHKFPKSDS
QRAIENLILSLER
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g7087.t1 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 62 | 250 | 1.9E-12 |
| 4 | g7087.t1 | Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 263 | 431 | 1.1E-8 |
| 1 | g7087.t1 | PANTHER | PTHR12001:SF55 | DECAPRENYL-DIPHOSPHATE SYNTHASE SUBUNIT 2 | 31 | 429 | 3.0E-81 |
| 2 | g7087.t1 | PANTHER | PTHR12001 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE | 31 | 429 | 3.0E-81 |
| 7 | g7087.t1 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 8 | g7087.t1 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 5 | - |
| 9 | g7087.t1 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 6 | 16 | - |
| 10 | g7087.t1 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 17 | 21 | - |
| 6 | g7087.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 433 | - |
| 3 | g7087.t1 | SUPERFAMILY | SSF48576 | Terpenoid synthases | 105 | 417 | 1.1E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed