Gene loci information

Transcript annotation

  • This transcript has been annotated as Diacylglycerol kinase epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7096 g7096.t1 TSS g7096.t1 21176627 21176627
chr_2 g7096 g7096.t1 isoform g7096.t1 21176692 21178499
chr_2 g7096 g7096.t1 exon g7096.t1.exon1 21176692 21177454
chr_2 g7096 g7096.t1 cds g7096.t1.CDS1 21176692 21177454
chr_2 g7096 g7096.t1 exon g7096.t1.exon2 21177544 21177627
chr_2 g7096 g7096.t1 cds g7096.t1.CDS2 21177544 21177627
chr_2 g7096 g7096.t1 exon g7096.t1.exon3 21177698 21178317
chr_2 g7096 g7096.t1 cds g7096.t1.CDS3 21177698 21178317
chr_2 g7096 g7096.t1 exon g7096.t1.exon4 21178380 21178499
chr_2 g7096 g7096.t1 cds g7096.t1.CDS4 21178380 21178499
chr_2 g7096 g7096.t1 TTS g7096.t1 21178664 21178664

Sequences

>g7096.t1 Gene=g7096 Length=1587
ATGGATTTTTATTTAATTGTGCTAATCTTTCTTATCTTACTTGTTCTTTGGATTATATTA
CACTATTATGCTAAGCCAATCATTGTCATAAATGATAGGAAGAAGCGACATTTGTGGAAG
AATAAAAATGAAAGTGATCATTTTATTTTATTTTGCAACATCTGCGAACATCTTTGTTCT
GCTTCTTCTTTCATCTGTGAATATTGCTCTATTGCGTGTGATAGAATTGAGTGTACGAAG
ATTGCGGATAAATCTTTAAAATGTAAGCAGGAAAAAGAAAGACGTGAATTGAAATCAACT
GAAGTGAAGCATCATTATATTAAAGGAAATCTTATTGAAACAGTGTGTAGCTCTTGTAAT
TTAGAAATTGAAGGTGTTCATGATGTAGGCATACATGGTACTAAGTGTTGCTGGTGTCAT
AATAGCTTTCATAATTCATGTGCAAAGAGTGAATTAGTTTGTAATTTTGGAAAATTACGA
GATTTTGTTATACCACCATTCTCTGTAAGAGCAGCGAGAACAAGGAGTGCTCCAAAATTG
CATCTAAATGAAATAACACCAATTCCTGAATGGCCTAATTGGCAACCACTAATTGTAATA
GCTAATAAATCTTCAGGCAGCAATGAAGCTGATAATATAGCAACTTTATTCAAAAGAGTT
CTTAATCCCATTCAAGTTGTTATATTAAATAATCATGGACCTGCTGAGGCGCTAGAAATT
GTAAAACTATCGCCTGTTAAATGTCGTATTTTAGTATGTGGAGGTGATGGCTCAGTAGCG
TGGACACTTAATACAATTAGCGAGATGAAATTGGATGACAAAGTATCGATTGCAATTTGT
CCACAAGGTACAGGCAATGATTTATCACGTGTATTGAACTGGGGTGCAGAAATTGAAGAT
AACGATCTACAATCTCCTTTTGAATTAATTGAAAAAATAAGGAATGCAGAAGAAATTTTT
TTAGATAGATGGCTCATTGAAACAAAATATGATCACAGAACAATGATCACAAGACGCTTA
CATCACGACAAAAAAACATTTATGTACAACTATTTTAGTGTCGGCGTTGATGCATTAGTA
ACTTTAAATTTCCATAAAGCTCGTGCGAGTGCTCTCTATGTGATTAAAAGCAAAATCATT
AACAAGTTTCTGTATTTTATTTATGGCACTCAACAAGTTATAATGCAAGACTGTGACGGT
CTTCATGAGTATTTGGAATTATACATAAATGATATAGAGCAAGAACTCCCTGATTTACAA
AGTGTTATCTGCTTGAACATAAATTCTTGGGGTGGTGGAGTAAAATTAGTGGATATAATA
AAGGAGCATGATAAAGTATTTGCCGAAGGTCATTCGATAAATGATGAGGCGTTAGAAATT
TTTGGAATATCATCTTCTTTCCATATTGCGCAATTGCAAGTTGGTTTAACTAAACCGATT
AAATTGGGAAAGGCTAGAGAACTCAAGGTGAAACTAAAAAAAGTTCTTCCTATTCAAATT
GATGGTGAACCTCACACTGAGATACCTTGTGAAATTAAAATCTCAGCACATAGTCAAGCG
AGGATGTTAAGGAGAAGAATAAATTAA

>g7096.t1 Gene=g7096 Length=528
MDFYLIVLIFLILLVLWIILHYYAKPIIVINDRKKRHLWKNKNESDHFILFCNICEHLCS
ASSFICEYCSIACDRIECTKIADKSLKCKQEKERRELKSTEVKHHYIKGNLIETVCSSCN
LEIEGVHDVGIHGTKCCWCHNSFHNSCAKSELVCNFGKLRDFVIPPFSVRAARTRSAPKL
HLNEITPIPEWPNWQPLIVIANKSSGSNEADNIATLFKRVLNPIQVVILNNHGPAEALEI
VKLSPVKCRILVCGGDGSVAWTLNTISEMKLDDKVSIAICPQGTGNDLSRVLNWGAEIED
NDLQSPFELIEKIRNAEEIFLDRWLIETKYDHRTMITRRLHHDKKTFMYNYFSVGVDALV
TLNFHKARASALYVIKSKIINKFLYFIYGTQQVIMQDCDGLHEYLELYINDIEQELPDLQ
SVICLNINSWGGGVKLVDIIKEHDKVFAEGHSINDEALEIFGISSSFHIAQLQVGLTKPI
KLGKARELKVKLKKVLPIQIDGEPHTEIPCEIKISAHSQARMLRRRIN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g7096.t1 Gene3D G3DSA:3.30.60.20 - 101 155 2.8E-6
7 g7096.t1 Gene3D G3DSA:3.40.50.10330 - 194 315 1.5E-12
6 g7096.t1 Gene3D G3DSA:2.60.200.40 - 344 514 8.9E-12
3 g7096.t1 PANTHER PTHR11255 DIACYLGLYCEROL KINASE 7 524 7.5E-141
4 g7096.t1 PANTHER PTHR11255:SF45 DIACYLGLYCEROL KINASE EPSILON 7 524 7.5E-141
2 g7096.t1 Pfam PF00781 Diacylglycerol kinase catalytic domain 196 300 1.0E-20
1 g7096.t1 Pfam PF00609 Diacylglycerol kinase accessory domain 347 504 4.7E-42
10 g7096.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
11 g7096.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 24 -
9 g7096.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 25 528 -
15 g7096.t1 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 103 154 9.019
16 g7096.t1 ProSiteProfiles PS50146 DAG-kinase catalytic (DAGKc) domain profile. 192 330 28.682
14 g7096.t1 SMART SM00046 dagk_c4a_7 196 324 4.3E-31
13 g7096.t1 SMART SM00045 dagk_c4b_2 347 504 1.1E-38
5 g7096.t1 SUPERFAMILY SSF111331 NAD kinase/diacylglycerol kinase-like 196 520 1.37E-46
12 g7096.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 24 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004143 diacylglycerol kinase activity MF
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway BP
GO:0003951 NAD+ kinase activity MF
GO:0007165 signal transduction BP
GO:0016301 kinase activity MF
GO:0035556 intracellular signal transduction BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values