Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Diacylglycerol kinase epsilon.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7096 g7096.t2 TSS g7096.t2 21176627 21176627
chr_2 g7096 g7096.t2 isoform g7096.t2 21176692 21177704
chr_2 g7096 g7096.t2 exon g7096.t2.exon1 21176692 21177454
chr_2 g7096 g7096.t2 cds g7096.t2.CDS1 21176692 21177454
chr_2 g7096 g7096.t2 exon g7096.t2.exon2 21177544 21177627
chr_2 g7096 g7096.t2 cds g7096.t2.CDS2 21177544 21177627
chr_2 g7096 g7096.t2 exon g7096.t2.exon3 21177698 21177704
chr_2 g7096 g7096.t2 cds g7096.t2.CDS3 21177698 21177702
chr_2 g7096 g7096.t2 TTS g7096.t2 21178664 21178664

Sequences

>g7096.t2 Gene=g7096 Length=854
ATGGATTTTTATTTAATTGTGCTAATCTTTCTTATCTTACTTGTTCTTTGGATTATATTA
CACTATTATGCTAAGCCAATCATTGTCATAAATGATAGGAAGAAGCGACATTTGTGGAAG
AATAAAAATGAAAGTGATCATTTTATTTTATTTTGCAACATCTGCGAACATCTTTGTTCT
GCTTCTTCTTTCATCTGTGAATATTGCTCTATTGCGTGTGATAGAATTGAGTGTACGAAG
ATTGCGGATAAATCTTTAAAATGTAAGCAGGAAAAAGAAAGACGTGAATTGAAATCAACT
GAAGTGAAGCATCATTATATTAAAGGAAATCTTATTGAAACAGTGTGTAGCTCTTGTAAT
TTAGAAATTGAAGGTGTTCATGATGTAGGCATACATGGTACTAAGTGTTGCTGGTGTCAT
AATAGCTTTCATAATTCATGTGCAAAGAGTGAATTAGTTTGTAATTTTGGAAAATTACGA
GATTTTGTTATACCACCATTCTCTGTAAGAGCAGCGAGAACAAGGAGTGCTCCAAAATTG
CATCTAAATGAAATAACACCAATTCCTGAATGGCCTAATTGGCAACCACTAATTGTAATA
GCTAATAAATCTTCAGGCAGCAATGAAGCTGATAATATAGCAACTTTATTCAAAAGAGTT
CTTAATCCCATTCAAGTTGTTATATTAAATAATCATGGACCTGCTGAGGCGCTAGAAATT
GTAAAACTATCGCCTGTTAAATGTCGTATTTTAGTATGTGGAGGTGATGGCTCAGTAGCG
TGGACACTTAATACAATTAGCGAGATGAAATTGGATGACAAAGTATCGATTGCAATTTGT
CCACAAGGTACAGG

>g7096.t2 Gene=g7096 Length=284
MDFYLIVLIFLILLVLWIILHYYAKPIIVINDRKKRHLWKNKNESDHFILFCNICEHLCS
ASSFICEYCSIACDRIECTKIADKSLKCKQEKERRELKSTEVKHHYIKGNLIETVCSSCN
LEIEGVHDVGIHGTKCCWCHNSFHNSCAKSELVCNFGKLRDFVIPPFSVRAARTRSAPKL
HLNEITPIPEWPNWQPLIVIANKSSGSNEADNIATLFKRVLNPIQVVILNNHGPAEALEI
VKLSPVKCRILVCGGDGSVAWTLNTISEMKLDDKVSIAICPQGT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g7096.t2 Gene3D G3DSA:3.30.60.20 - 101 155 1.1E-6
5 g7096.t2 Gene3D G3DSA:3.40.50.10330 - 194 284 3.6E-7
2 g7096.t2 PANTHER PTHR11255 DIACYLGLYCEROL KINASE 7 284 2.4E-49
3 g7096.t2 PANTHER PTHR11255:SF45 DIACYLGLYCEROL KINASE EPSILON 7 284 2.4E-49
1 g7096.t2 Pfam PF00781 Diacylglycerol kinase catalytic domain 196 284 8.5E-14
8 g7096.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
9 g7096.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 24 -
7 g7096.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 25 284 -
12 g7096.t2 ProSiteProfiles PS50081 Zinc finger phorbol-ester/DAG-type profile. 103 154 9.019
13 g7096.t2 ProSiteProfiles PS50146 DAG-kinase catalytic (DAGKc) domain profile. 192 284 19.208
11 g7096.t2 SMART SM00046 dagk_c4a_7 196 284 0.0013
4 g7096.t2 SUPERFAMILY SSF111331 NAD kinase/diacylglycerol kinase-like 192 284 2.14E-14
10 g7096.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 24 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004143 diacylglycerol kinase activity MF
GO:0003951 NAD+ kinase activity MF
GO:0007165 signal transduction BP
GO:0016301 kinase activity MF
GO:0035556 intracellular signal transduction BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed