General information for g7101.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative NAD kinase 2, mitochondrial.
Parent gene
- The parent gene g7101 is located on chr_2: 21189768..21192179 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g7101 | g7101.t3 | isoform | g7101.t3 | 21188492 | 21190021 |
| chr_2 | g7101 | g7101.t3 | exon | g7101.t3.exon1 | 21188492 | 21189041 |
| chr_2 | g7101 | g7101.t3 | TTS | g7101.t3 | 21188505 | 21188505 |
| chr_2 | g7101 | g7101.t3 | cds | g7101.t3.CDS1 | 21188830 | 21189041 |
| chr_2 | g7101 | g7101.t3 | exon | g7101.t3.exon2 | 21189108 | 21189378 |
| chr_2 | g7101 | g7101.t3 | cds | g7101.t3.CDS2 | 21189108 | 21189378 |
| chr_2 | g7101 | g7101.t3 | TSS | g7101.t3 | 21189283 | 21189283 |
| chr_2 | g7101 | g7101.t3 | exon | g7101.t3.exon3 | 21189770 | 21190021 |
| chr_2 | g7101 | g7101.t3 | cds | g7101.t3.CDS3 | 21189770 | 21189985 |
Sequences
>g7101.t3 Gene=g7101 Length=1073
GCTGTAAAGAAAATAATTAAAGGAGAATTTGAATGGATGCATAGATCACGTATCAGAATA
ACTCTATTGAAATTTAATGGTGAAACACCAATACCTATAGATCTTCATGAATTTAATCCT
GCGCCTGTAGAGCACAAAGAACTTTTTGTGTCTGAACCTTCGTTACTGGATCAAATTAAT
GGAGGAGCGTATTACCCAGGAAGAAAGAATAAAGCAACAAAACGCATATTGCCGTACTTG
GCGCTTAATGAGGTTTTCATTGGAGAAACCTTATCAGCCCGAGTTTCACATCTACACATT
CGTCCAAGTACAACTCAAAAAATTACAAAAACAAAAAGTTCAGGCTTGTGTGTATCAACA
GGAACAGGATCGACAAGCTGGCATACATCTATCAATCGTCTATCTAATAAAAATGTTGAG
GATTTACTACAGCTTCTAAAGAAAAACAATAAAGTAGATTTGAATGGCGTTGATGCTGGT
GAGATATGTGAGGAATATAATCGTCAACTTGTTTTTGAGCCTGACGACCCGAGATTATGC
TACTCAATTAGAGAACAAATTTGTGTTGGTGTTTGGCCAAATCCAAAAGGATTTGAATCA
CGTGATTTCGCGCAAAATTTATATGTAAAAAGTAGATGCTTCGATGCAAGTAAGTTCAAT
AACATAGTGATAAGGAATTTTTATAGTGTTGACTTAATTATCTCTTTAATTGTATTCTCT
AGGTCTGGTGATTGATGGTACTGTATCATATAAATTTAATGATGGTACGAAGGCGCTCTT
AGAAGTATTACCTGAAGACGCTTTATTGACTATGAAGATAGAAGATTAAACTAGATTTCA
TCATGGTGATAATTTCTCATACTTTAATGACCTGATGCATTTTGTCATGATGGCTAAGAT
ATTTTATTATTTGACTGAGCAGCAGCCAAAAAACTGAAAGCAAATTTTTTACTTTATAAA
TTCTAAATTAAATTATTTTTACGCCATAAATTATACAAAATAATTGTACATATATTATCA
AGTTAAGTTATTACACAATACAGAGATGACTTTTTTCTAAAATTGACTGATAT
>g7101.t3 Gene=g7101 Length=232
MHRSRIRITLLKFNGETPIPIDLHEFNPAPVEHKELFVSEPSLLDQINGGAYYPGRKNKA
TKRILPYLALNEVFIGETLSARVSHLHIRPSTTQKITKTKSSGLCVSTGTGSTSWHTSIN
RLSNKNVEDLLQLLKKNNKVDLNGVDAGEICEEYNRQLVFEPDDPRLCYSIREQICVGVW
PNPKGFESRDFAQNLYVKSRCFDASKFNNIVIRNFYSVDLIISLIVFSRSGD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g7101.t3 | Gene3D | G3DSA:2.60.200.30 | - | 45 | 120 | 1e-07 |
| 1 | g7101.t3 | PANTHER | PTHR13158 | - | 1 | 205 | 0e+00 |
| 2 | g7101.t3 | PANTHER | PTHR13158:SF5 | NAD KINASE 2, MITOCHONDRIAL | 1 | 205 | 0e+00 |
| 3 | g7101.t3 | SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 59 | 120 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003951 | NAD+ kinase activity | MF |
| GO:0019674 | NAD metabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
