Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g7102 g7102.t1 isoform g7102.t1 21197216 21197755
chr_2 g7102 g7102.t1 exon g7102.t1.exon1 21197216 21197755
chr_2 g7102 g7102.t1 cds g7102.t1.CDS1 21197216 21197755
chr_2 g7102 g7102.t1 TSS g7102.t1 NA NA
chr_2 g7102 g7102.t1 TTS g7102.t1 NA NA

Sequences

>g7102.t1 Gene=g7102 Length=540
ATGGCAACGGGTGGGGAATCCGAGGACATTGTGATGAATGAGGCTTTAAGCCCATTCTCA
GCTGAAAATCGGTTCGAAACTCTCTCTGATAATGACGATGGCAGTGACTTCCAACTTAAT
GACGATGAGAGAAATCGACTGAACAAAAGAAGAAGAACAACCGGAAAAAGCCTAACCTCA
AACCATCTAGAACAACAAGTTACAAATCAAAAACCTCCGCCCCTAATTGTCTTACACAGC
AACATTGACAAAATCAAAGAACAATTGCTAAAACTTAACATCACTGAATACACTCTGAGA
CTTACTAGCGAAGGGACAAGAATTTTCTGTTCAAAACTGGGTGAATATAAAACACTTAAG
GAAAACATGATTAGCTCCAAAATACCATTTTTCACACACAGACTAAAAGATGAACAAGTG
ACAAAATTCGTCTTGAAAGGACTCCACAAAATGGACACGAACGAGATAAAGGACGCGATC
CAAATAAATAATTCCAAACCAGCAACAGTACAAGCATTGAAGACAAAAAAATCAAAATGA

>g7102.t1 Gene=g7102 Length=179
MATGGESEDIVMNEALSPFSAENRFETLSDNDDGSDFQLNDDERNRLNKRRRTTGKSLTS
NHLEQQVTNQKPPPLIVLHSNIDKIKEQLLKLNITEYTLRLTSEGTRIFCSKLGEYKTLK
ENMISSKIPFFTHRLKDEQVTKFVLKGLHKMDTNEIKDAIQINNSKPATVQALKTKKSK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g7102.t1 MobiDBLite mobidb-lite consensus disorder prediction 28 71 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed